# Plants Only graphs

- Auto-generated Table of Content
[ToC]

## 1. drPotAnse1

### 1.1 drPotAnse1 MBG 1001k with mito reads


### 1.2 drPotAnse1 MBG 5001k with mito reads


### 1.3 - with both references

Running MBG after mapping to chloro and mito refs

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## 2.ucDunPrim2

### 2.1 ucDunPrim2 Mito run with regular hifiasm within MitoHifi

The close-related (KX641170 - 41904 bp) mito A frameshift on ND6 - need polishing!

![](https://i.imgur.com/PIdDDJh.png)


### 2.2 ucDunPrim2 MBG 1k with pulled reads for both, mito and chloro

![](https://i.imgur.com/qNyC7uc.png)

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## 3. drFilUlma1
### 3.1 drFilUlma1 MBG k=1001


![](https://i.imgur.com/4MJrDjJ.png)

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### 3.1 drFilUlma1 MBG k=5001


![](https://i.imgur.com/pyWbsgb.png)


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## 4. daLycEuro1

### 4.1 daLycEuro1 mito only reads MBG k=1001

![](https://i.imgur.com/xWwGapC.png)

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### 4.2 daLycEuro1 with both reads and MBG k=1001

![](https://i.imgur.com/sk4TICB.png)

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### 4.3 daLycEuro1 with both reads and MBG k=5001

![](https://i.imgur.com/YpchSGK.png)

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## Try join_segments

drPotAnse1 - chloro
ucDunPrim2 - chloro

MBG direction flag —single-arr


## 5. daSolDulc1

### 5.1 daSolDulc1 MBG k=1001

Mapped to both chloro & Mito

![](https://i.imgur.com/xAteZB9.png)

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### 5.2 daSolDulc1 MBG k=5001

![](https://i.imgur.com/xPfCi2C.png)

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### 5.3 daSolDulc1 MBG k=4001

![](https://i.imgur.com/0oh68kJ.png)

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## 6. drMalDome10 MBG K=1001

MBG K=1001

![](https://i.imgur.com/zgHAzor.png)

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### 6.1 drMalDome11 MBG K=1001

MBG K=1001

![](https://i.imgur.com/nI40boi.png)

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### 6.11 drMalDome11 MBG k=5001
MBG K=5001

![](https://i.imgur.com/9Bxpanr.png)

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### 6.2 drMalDome10 MBG k=1001

![](https://i.imgur.com/vx0yQPs.png)

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### 6.21 drMalDome10 MBG k=5001

![](https://i.imgur.com/sFEb6mv.png)

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### 6.3 drMalDome58 MBG k=5001

![](https://i.imgur.com/18kXZis.png)

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## 7 drHedHeli1
### 7.1 drHedHeli1 MBG = 1001k

![](https://i.imgur.com/vu3CCoM.png)


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### 7.2 drHedHeli1 MBG = 5001k

![](https://i.imgur.com/VZNUYjR.png)

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## 8. dcPolAvic1
### 8.1 dcPolAvic1 MBG = 1001k


![](https://i.imgur.com/fdEbmPD.png)


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### 8.2 dcPolAvic1 MBG = 5001k

![](https://i.imgur.com/1fAcwPp.png)


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## 9. drMalSylv7
### 9.1 drMalSylv7 MBG = 1001k

![](https://i.imgur.com/qJkEqsF.png)

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### 9.2 drMalSylv7 MBG = 5001k

![](https://i.imgur.com/afKfpse.png)


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## 10 dhAlnGlut1
### 10.1 dhAlnGlut1 MBG= 1001K

![](https://i.imgur.com/HaEVI30.png)

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### 10.1 dhAlnGlut1 MBG= 5001K

![](https://i.imgur.com/4kCG7Fz.png)

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## 11 cbRhyLore1
### 11.1 cbRhyLore1 MBG= 1001K

![](https://i.imgur.com/qDk5C9Y.png)

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### 11.2 cbRhyLore1 MBG= 5001K

![](https://i.imgur.com/DcrA2Yr.png)

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## 12 cbThuTama2 
### 12.1 cbThuTama2 MBG= 1001K

![](https://i.imgur.com/ODfKfxu.png)

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### 12.2 cbThuTama2 MBG= 5001K

![](https://i.imgur.com/W3XHh6I.png)


## 13 dhQueRobu3
### 13.1 dhQueRobu3 MBG= 1001K

![](https://i.imgur.com/CilWF2s.png)


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### 13.2 dhQueRobu3 MBG= 5001K


![](https://i.imgur.com/dpjzCYl.png)

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## 14. ddMerAnnu1
### 14.1 ddMerAnnu1 MBG k=1001

![](https://i.imgur.com/cxi5lZp.png)


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### 14.2. ddMerAnnu1 MBG k=5001

![](https://i.imgur.com/Pp4NxYm.png)