make_ranges for Pilon
==

source $HOME/Oyster_River_Protocol/software/anaconda/install/bin/activate 3d-dna

python $HOME/nanopolish/scripts/nanopolish_makerange.py \
--segment-length 1000000 \
--overlap-length -1 $HOME/pero_genome/Peer1.7.1.fasta \
| tee -a Peer171.ranges
sed -i 's_:0-_:1-_g' Peer171.ranges

### make lists

grep ">" $HOME/pero_genome/Peer1.7.1.fasta | sed 's_>__' | tee -a chr.list
cat chr.list | shuf | split -d -l 1 - genomechunk.
rename genomechunk.0 genomechunk. genomechunk.0*