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# System prepended metadata

title: 'Gut Microbiome Data Analysis: from 16S Gene Sequencing to Complete Metagenomes'

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# Gut Microbiome Data Analysis: from 16S Gene Sequencing to Complete Metagenomes

Here is information about metagenomics class in the **[Summer School: AI for Bio-Medicine](https://leibniz-ai-lab.de/?etn=summer-school-ai-for-bio-medicine)** (June 29th 2022). 

## Schedule
![](https://i.imgur.com/FY5eCt1.jpg)

### Lecture: 
Gut Microbiome Data Analysis: from 16S Gene Sequencing to Complete Metagenomes

* Download slides :arrow_right: [here](https://drive.google.com/file/d/1W9dvIgeTFo8JVGlsjT1fcTGwa92ewM06/view?usp=sharing). 
### Hands-on Visualizing microbiome data with [MicrobiomeAnalyst](https://www.microbiomeanalyst.ca/):

We are going to use an example dataset from MicrobiomeAnalyst, please download it before class :wink: 
* Download data :arrow_right: [here](https://www.microbiomeanalyst.ca/MicrobiomeAnalyst/resources/data/ibd_data.zip). 
* Download slides :arrow_right: [here](https://drive.google.com/file/d/1NY_Zj0oHHUYJuLsYS-A7krVcUzJYxH-N/view?usp=sharing). 

:::info
:female-construction-worker: **Dataset info:** 
Stool samples from Inflammatory bowel disease patients (n=43)
ASV table: *ibd_asv_table.txt*
Metadata: *ibd_meta.csv* (Control; CD:Crohn's disease)
Taxonomy table: *ibd_taxa.txt*
Phylogenetic tree: *ibd_tree.tre*
List of taxa: *ibd_tsea_list.txt*
:::
 

