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# System prepended metadata

title: Preprocesed Data Location

---

# Preprocesed Data Location 

- **Base path: /archive/data/TAY/pipelines/**
- Baseline data only (except MRIQC)

## fMRIPrep (Total = 274 unique subjects): 

- MJ: ./bids_apps/fmriprep-ciftify/
    - 162 subs
- JW: ./in_progress/jwong/fmriprep/baseline/output/
    - 112 subs

## ASLPrep (Total = 254 unique subjects):

- MJ: ./in_progress/baseline/aslprep/
    - 154 subs
- JW: ./in_progress/jwong/aslprep/baseline/output/aslprep/
    - 100 subs

## QSIPrep (Total = 274 unique subjects): 

- MJ: ./in_progress/baseline/qsiprep/
    - 187 subs
- JW: ./in_progress/jwong/qsiprep/output/qsiprep/
    - 112 subs
    - contain 25 duplicates 
    - Duplicates: ['sub-CMH00000005', 'sub-CMH00000020', 'sub-CMH00000086', 'sub-CMH00000120', 'sub-CMH00000197', 'sub-CMH00000201', 'sub-CMH00000221', 'sub-CMH00000225', 'sub-CMH00000232', 'sub-CMH00000245', 'sub-CMH00000250', 'sub-CMH00000257', 'sub-CMH00000262', 'sub-CMH00000266', 'sub-CMH00000270', 'sub-CMH00000276', 'sub-CMH00000279', 'sub-CMH00000281', 'sub-CMH00000282', 'sub-CMH00000288', 'sub-CMH00000294', 'sub-CMH00000297', 'sub-CMH00000304', 'sub-CMH00000308', 'sub-CMH00000312']

## MRIQC (Total = 275 unique subjects): 

- MJ: ./in_progress/mriqc/
    - can be ignored, JW re-ran on all subjects
- JW: ./in_progress/jwong/mriqc_v2/output/
    - 275 subs
    - should be 286 (11 missing)
    - missing subs: ['sub-CMH00000013', 'sub-CMH00000036', 'sub-CMH00000202', 'sub-CMH00000223', 'sub-CMH00000224', 'sub-CMH00000277', 'sub-CMH00000315', 'sub-CMH00000341', 'sub-CMH00000359', 'sub-CMH00000415', 'sub-CMH00000435']
