# Datalad Install

Original dataset: /archive/data/TAY/pipelines/bids_apps/fmriprep-ciftify/fmriprep

datalad dataset: /scratch/jwong/fmriprep_dl/

new dataset: /archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep

new datalad target directory: /scratch/jwong/fmriprep_dl_v2/

Error message:

(datalad) jwong@tesla:/scratch/jwong/fmriprep_dl_v2$ datalad install -r -s file:///archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep/ fmriprep

install(error): /scratch/jwong/fmriprep_dl_v2/fmriprep (dataset) [Failed to clone from any candidate source URL. Encountered errors per each url were:

file:///archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep/
CommandError: 'git -c diff.ignoreSubmodules=none clone --progress /archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep/ /scratch/jwong/fmriprep_dl_v2/fmriprep' failed with exitcode 128 [err: 'fatal: repository '/archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep/' does not exist']]

[ERROR ] NoDatasetFound(No installed dataset found at /scratch/jwong/fmriprep_dl_v2/fmriprep) (NoDatasetFound)
usage: datalad install [-h] [-s SOURCE] [-d DATASET] [-g] [-D DESCRIPTION] [-r] [-R LEVELS] [--reckless [auto|ephemeral|shared-...]] [-J NJOBS] [--branch BRANCH] [--version] [PATH [PATH ...]]

Solution Rsync:

shopt -s globstar

rsync -acR /archive/data/TAY/pipelines/in_progress/jwong/fmriprep/baseline/output/fmriprep/**/anat/ /scratch/jwong/fmriprep_dl_v2/