<!-- .slide: data-background="https://raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg" -->
<a href="https://www.nf-co.re/eager"><img src="https://github.com/nf-core/eager/raw/master/docs/images/nf-core_eager_logo_outline_drop.png" width="70%"><img></a>
## Introductory Tutorial
James A. Fellows Yates
🦣 @jfy133@genomic.social / <img src="https://openmoji.org/data/color/svg/E045.svg" width=50> @jfy133
---
## What is ancient DNA?
<img width="45%" src="https://journals.asm.org/cms/10.1128/msystems.01315-21/asset/310663c1-93fa-4ee2-b048-9cd8344e9e22/assets/images/medium/msystems.01315-21-f002.gif">
<br>
<a src="http://dx.doi.org/10.1016/j.cub.2017.10.025" style="font-size:0.25em;font-family:Roboto">
Der Sarkissian et al. (2021) mSystems
</a>
---
## What is nf-core/eager?

<a src="http://dx.doi.org/10.1016/j.cub.2017.10.025" style="font-size:0.25em;font-family:Roboto">
Fellows Yates et al. (2021) PeerJ
</a>
---
---
# Demo
- Simultenous
- generation of variant calls of host for population genetics
- metagenomic screening of off-target reads
---
## What analysis can it do?

---
## Need help?
<!-- .slide: data-background="https://raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg" -->
Publication: [`DOI 10.7717/peerj.10947`](https://doi.org/10.7717/peerj.10947)
GitHub Repository: [`nf-core/eager`](https://github.com/nf-core/eager)
Website: [`https://nf-co.re/eager`](https://nf-co.re/eager)
Chat: [`https://nf-co.re/join`](https://nf-co.re/join) <img src="https://cdn.brandfolder.io/5H442O3W/at/pl546j-7le8zk-6gwiyo/Slack_Mark.svg" width=7.5%></img>`#eager`
<p align="center">
Follow nf-core on
<a href="https://www.twitter.com/nf_core"><img src="https://openmoji.org/data/color/svg/E040.svg" width=6%></a>
<a href="https://github.com/nf-core"><img src="https://openmoji.org/data/color/svg/E045.svg" width=6%></a>
<a href="https://www.youtube.com/c/nf-core"><img src="https://openmoji.org/data/color/svg/E044.svg" width=6%></a>
</a>
</p>
<a href="https://nf-co.re/" style="color: #000000; font-family:Monaco, monospace; font-weight:bold;">https://nf-co.re/</a>
<div style="display: flex; justify-content: space-evenly; align-items:center;">
<img src="https://chanzuckerberg.com/wp-content/themes/czi/img/logo.svg" width=10%>
<div style="font-style:italic; font-size: 0.5em; color: #666;">Icons:<br><a href="https://openmoji.org">openmoji.org</a></div>
</div>
</div>
<style>
.reveal section img { background:none; border:none; box-shadow:none; }
body {
background-image: url(https://github.com/nf-core/eager/raw/dev/docs/images/eager_icon.svg);
background-size: 7.5%;
background-repeat: no-repeat;
background-position: 3% 96%;
background-color: #181a1b;
}
.reveal body {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal p {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal h1 {
font-family: 'Roboto', sans-serif;
font-style: bold;
font-weight: 400;
color: white;
font-size: 62px;
}
.reveal h2 {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal h3 {
font-family: 'Roboto', sans-serif;
font-style: italic;
font-weight: 300;
color: white;
}
.reveal p {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal li {
font-family: 'Roboto', sans-serif;
font-weight: 300;
color: white;
}
.reveal pre {
background-color: #272822 !important;
display: inline-block;
border-radius: 7px;
color: #aaaba9;
}
.reveal pre code {
color: #eeeeee;
background-color: #272822;
font-size: 100%;
}
.reveal code {
background-color: #272822;
font-size: 75%;
}
.reveal .progress {
color: #24B064;
}
.reveal .controls button {
color: #24B064;
}
.reveal blockquote {
display: block;
position: relative;
width: 90%;
margin: 20px auto;
padding: 5px;
background: rgba(255, 255, 255, 0.05);
box-shadow: 0px 0px 2px rgb(0 0 0 / 20%);
}
</style>
{"metaMigratedAt":"2023-06-17T14:13:14.854Z","metaMigratedFrom":"YAML","title":"nf-core/eager intro video slides","breaks":true,"contributors":"[{\"id\":\"6357fb8d-b0f8-4b7d-9fbe-6d813ad67700\",\"add\":4829,\"del\":403}]"}