<!-- .slide: data-background="https://raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg" --> <a href="https://www.nf-co.re/eager"><img src="https://github.com/nf-core/eager/raw/master/docs/images/nf-core_eager_logo_outline_drop.png" width="70%"><img></a> ## Introductory Tutorial James A. Fellows Yates 🦣 @jfy133@genomic.social / <img src="https://openmoji.org/data/color/svg/E045.svg" width=50> @jfy133 --- ## What is ancient DNA? <img width="45%" src="https://journals.asm.org/cms/10.1128/msystems.01315-21/asset/310663c1-93fa-4ee2-b048-9cd8344e9e22/assets/images/medium/msystems.01315-21-f002.gif"> <br> <a src="http://dx.doi.org/10.1016/j.cub.2017.10.025" style="font-size:0.25em;font-family:Roboto"> Der Sarkissian et al. (2021) mSystems </a> --- ## What is nf-core/eager? ![](https://github.com/nf-core/eager/raw/master/docs/images/usage/eager2_workflow.png) <a src="http://dx.doi.org/10.1016/j.cub.2017.10.025" style="font-size:0.25em;font-family:Roboto"> Fellows Yates et al. (2021) PeerJ </a> --- --- # Demo - Simultenous - generation of variant calls of host for population genetics - metagenomic screening of off-target reads --- ## What analysis can it do? ![](https://github.com/nf-core/eager/raw/master/docs/images/usage/eager2_metromap_complex.png) --- ## Need help? <!-- .slide: data-background="https://raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_white_bg.svg" --> Publication: [`DOI 10.7717/peerj.10947`](https://doi.org/10.7717/peerj.10947) GitHub Repository: [`nf-core/eager`](https://github.com/nf-core/eager) Website: [`https://nf-co.re/eager`](https://nf-co.re/eager) Chat: [`https://nf-co.re/join`](https://nf-co.re/join) <img src="https://cdn.brandfolder.io/5H442O3W/at/pl546j-7le8zk-6gwiyo/Slack_Mark.svg" width=7.5%></img>`#eager` <p align="center"> Follow nf-core on <a href="https://www.twitter.com/nf_core"><img src="https://openmoji.org/data/color/svg/E040.svg" width=6%></a> <a href="https://github.com/nf-core"><img src="https://openmoji.org/data/color/svg/E045.svg" width=6%></a> <a href="https://www.youtube.com/c/nf-core"><img src="https://openmoji.org/data/color/svg/E044.svg" width=6%></a> </a> </p> <a href="https://nf-co.re/" style="color: #000000; font-family:Monaco, monospace; font-weight:bold;">https://nf-co.re/</a> <div style="display: flex; justify-content: space-evenly; align-items:center;"> <img src="https://chanzuckerberg.com/wp-content/themes/czi/img/logo.svg" width=10%> <div style="font-style:italic; font-size: 0.5em; color: #666;">Icons:<br><a href="https://openmoji.org">openmoji.org</a></div> </div> </div> <style> .reveal section img { background:none; border:none; box-shadow:none; } body { background-image: url(https://github.com/nf-core/eager/raw/dev/docs/images/eager_icon.svg); background-size: 7.5%; background-repeat: no-repeat; background-position: 3% 96%; background-color: #181a1b; } .reveal body { font-family: 'Roboto', sans-serif; font-weight: 300; color: white; } .reveal p { font-family: 'Roboto', sans-serif; font-weight: 300; color: white; } .reveal h1 { font-family: 'Roboto', sans-serif; font-style: bold; font-weight: 400; color: white; font-size: 62px; } .reveal h2 { font-family: 'Roboto', sans-serif; font-weight: 300; color: white; } .reveal h3 { font-family: 'Roboto', sans-serif; font-style: italic; font-weight: 300; color: white; } .reveal p { font-family: 'Roboto', sans-serif; font-weight: 300; color: white; } .reveal li { font-family: 'Roboto', sans-serif; font-weight: 300; color: white; } .reveal pre { background-color: #272822 !important; display: inline-block; border-radius: 7px; color: #aaaba9; } .reveal pre code { color: #eeeeee; background-color: #272822; font-size: 100%; } .reveal code { background-color: #272822; font-size: 75%; } .reveal .progress { color: #24B064; } .reveal .controls button { color: #24B064; } .reveal blockquote { display: block; position: relative; width: 90%; margin: 20px auto; padding: 5px; background: rgba(255, 255, 255, 0.05); box-shadow: 0px 0px 2px rgb(0 0 0 / 20%); } </style>
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