--- tags: scverse, scanpy, external --- # 2024-04-15 Joe meeting Attendees: *Isaac, Severin, Phil, Joe, Mikaela* ## Agenda * Explain the logic behind each step for biologists * default choice (especially when deviating from the standard in the field) * alternatives to defaults – when should someone select an alternate choice? * what is the impact of different parameters – how much can they affect output? * Publish the software with performance against benchmarks * Provide visual explanations of pipeline steps * Explain technical variability introduced by changes in defaults * Maintain clear documentation explaining changes to defaults and calculations with new release ## Notes * Wants parameter choices in algorithms clearly explained * Contributions to code and documentation ## Follow up stuff * Maybe contributing to the docs? * Maybe there is some communication on collaboration b/w scanpy and seurat happening between lior and rahul, scverse should hear back.