###### tags: `event` `in attendance` `software`

[TOC]

# Event - COMBINE 2021

## Agenda

- <https://combine2021.sched.com>
- updating web schedule.
- pass: `COMBINE%2021?`
- <https://bit.ly/COMBINE2021_Schedule_HTML>
- clean HTML of sched site's print-mode
- <https://bit.ly/COMBINE2021_Schedule_iCal>
- combine2021.ics file for calendars
- <https://bit.ly/COMBINE2021_Schedule_iCal_Viewer>
- combine2021.ics preloaded in a web viewer

register as attendee if you use pw-protected links

## Finds

### [WikiNetworks](https://github.com/Thakar-Lab/WikiNetworks)

- machine-readable network models from wikipathways diagrams
- with automatic correction for spurious errors introduced by visual editing
- e.g. disconnected nodes/edges.
- Tutorials are jupyter + markdown export
- This is close to what we need for iGEM wiki
- https://github.com/Thakar-Lab/WikiNetworks/tree/main/Tutorials

### [COVID Graph](https://covidgraph.org)

knowledge graph of covid resources with some fairly reusable code on the github

## PAML

Jacob Beal 11:26 AM
Links to the current PAML prototype materials:
https://github.com/SD2E/paml
https://github.com/SD2E/paml-specification
https://github.com/rpgoldman/container-ontology

## DARPA SD2

Data Representation in the DARPA SD2 Program
https://www.biorxiv.org/content/10.1101/2021.09.17.460644v1