# Chamaecrista Analysis Tutorials ## December 13, 2022 ### Notebooks for Computer Setup Commands to use at Terminal ```bash #Start the bash shell bash #Get the notebook wget https://raw.githubusercontent.com/JasonJWilliamsNY/genome_camp_2021/main/genome_camp_2022/notebooks/Setup_notebook.ipynb ``` **Available Machines** ### Notebooks for Basecalling ```bash #Start the bash shell bash #Get the notebook wget https://raw.githubusercontent.com/JasonJWilliamsNY/genome_camp_2021/main/genome_camp_2022/notebooks/dorado_basecaller.ipynb ``` **Available Machines** ## January 10, 2022 ### Notebooks for Quality control ```bash #Start the bash shell bash #Get the notebook ## Fastqc wget https://github.com/JasonJWilliamsNY/genome_camp_2021/raw/main/genome_camp_2022/notebooks/chamecrista_FastQC-notebook_jupyter.ipynb ## Fastp wget https://github.com/JasonJWilliamsNY/genome_camp_2021/blob/main/genome_camp_2022/notebooks/chamecrista_ReadQC-with-fastp_jetstream.ipynb ``` **Available Machines**