Structure:
- context:
...
rule: rules.X.Y.Z
does: pass
- context:
...
rule: rules.X.Y.Z
does: notapply
- context:
...
rule: rules.X.Y.Z
does: fail
Two styles of test: File-based and mock context-based
sidecars, tabular_data, checks, files, errors
- rule: rules.checks.micr.PixelSizeInconsistent
does: pass # fail, does-not-apply
files:
- data_file: bids-examples/micr_SPIM/sub-01/micr/sub-01_sample-A_stain-LFB_chunk-03_SPIM.ome.tif
- sidecars:
- bids-examples/micr_SPIM/sub-01/micr/sub-01_sample-A_stain-LFB_chunk-03_SPIM.json
- rule: rules.checks.micr.PixelSizeInconsistent
does: pass # fail, does-not-apply
context:
sidecar:
PixelSize: [1, 1, 1]
PixelSizeUnit: "mm"
ome:
PhysicalSizeX: 1.0
PhysicalSizeY: 1.0
PhysicalSizeZ: 1.0
PhysicalSizeXUnit: mm
PhysicalSizeYUnit: mm
PhysicalSizeZUnit: mm
- rule: rules.files.raw.nirs.nirs
does: pass
context:
path: sub-01/nirs/sub-01_task-rest_nirs.snirf
- rule: rules.files.raw.nirs.nirs
does: fail
context:
path: sub-01/nirs/sub-01_task-rest_eeg.snirf
- rule: rules.files.raw.nirs.nirs
passes:
- context: {path: ...}
- context: {path: ...}
fails:
- context: {path: ...}
- context: {path: ...}
doesnotapply:
- context: {path: ...}
- context: {path: ...}
- rule: rules.sidecars.anat.TaskMetadata
does: pass
files:
- data: ...
- sidecars: [...]
%%{init: {"flowchart": {"htmlLabels": false}} }%%graph LRclassDef opt stroke-dasharray: 5
Jun 11, 2024Title
Jun 4, 2024Here we consider the problem of applying susceptibility distortion correctionto EPI imaging data. We derive an efficient algorithm for simultaneouslycorrecting for head motion and susceptibility distortions.
Nov 12, 2023[
Sep 26, 2023or
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