# 9/13Lab1_Notes used `ssh bi278` to log into Unix `ls` used as list command. Shows everything within the file you're in. `pwd` shows where you are colbyhome command did not function Entered lab_01a directory and copied course material into it `cp /courses/bi278/Course_Materials/lab_01a/* ./lab_01a` entered into lab_01a directory by typing `cd Lab_01a` `mkdir` to rename as Trial 1 Used `rmdir Trial 1` to delete directory name ```Spelling is IMPORTANT. a single extra letter or incorrect punctuation will result in wrong command or no command``` created directory named achybrid using mkdir. Moved achybrid_reconciled_playback_predicted_final_2015.txt into the directory using `mv achybrid_reconciled_playback_predicted_final_2015.txt achybrid` Organized further all files containing "songplot" into file "songplots", "raw_preference" into file "raw_preference", and any containing "achybrid" into "achybrid" NOTE* exit directory using `cd ~` Exercise 2 Organism Strain Contig count P. agricolaris baqs159 2 P. bonniea bbqs859 2 P. bonniea bbqs395 2 P. bonniea bbqs433. 2 P. fungorum BAA463 4 P. hayleyella bhqs155 2 P. hayleyella bhqs171. 35 P. hayleyella bhqs21. 35 P. hayleyella bhqs22 45 P. hayleyella bhqs23 36 P. hayleyella bhqs530. 2 P. hayleyella bhqs69 2 P. hayleyella BhQS11. 2 P. sprentiae WSM5005 5 P. terrae DSM17804 4 P. xenovorans LB400. 3 THIS TOOK FOREVER ex. `grep ">" /courses/bi278/Course_Materials/lab_01b/GCF_009455685.1_ASM945568v1_genomic.fna*` grep ">" PATH/test.fa showed 1 contig -v ">" PATH/test.fa counts all without header, "test" -v ">" PATH/test.fa | tr -d -c GCgc isolated just the G and Cs within the group -v ">" PATH/test.fa | tr -d -c GCgc | wc -c showed a count of G and C `grep -v ">" /courses/bi278/Course_Materials/lab_01b/test.fa | tr -d -c GCATatgc | wc -c` showed total number of bases Used bottom three codes in nano to successfully save a file in nano It's almost 4 and I am not up to calculate the GC I tried please give me credit used whole lab period bceno_SRR2558789.fasta bmulti_SRR8885150.fasta GCF_003019965.1_ASM301996v1_genomic.fna GCF_020419785.1_ASM2041978v1_genomic.fna