---
# System prepended metadata

title: Sepsis code review and QA
tags: [sepsis]

---

# Sepsis code review and QA
###### tags: `sepsis`

> [time=Tue, Aug 29, 2022 11:15 AM]
#### Manual test
- [x] AutoDA in `README.md`
- [x] python version (conda env ? or pyenv, virtualenv)
- [x] `Flask`, `requests`, `torch` are not in `requirements.py`?
- [x] confusion png table overlapped (`plt.figure()`, `plt.clf()`)
- [x] Model name assert?
- [x] `nn` mode ```KeyError: 'in_features'```
- [x] Model evaluation (false alarm rate calculation error? )$$ Original \ Miss \ Detection: 1 - recall = 1 - {{TP} \over {TP + FN}} = {FN \over {TP + FN}} $$  $$Miss \ Detection \ Rate(FNR): {FN \over P} = {FN \over {TP + FN}}$$ $$ Original \ False \ Alarm \ : 1 - precision = 1 - {{TP} \over {TP + FP}} = {{FP} \over {TP + FP}} $$  $$False \ Alarm \ Rate(FPR): {FP \over N} = {FP \over {TN + FP}} $$
---
- Confusion matrix:
```
[[45050,  4857]
 [  183,   805]]

[[tn,  fp]
 [fn,  tp]]
 
False alarm: FP / (TN + FP) = 4857 / (45050 + 4857) = 0.097 (0.8578)
```
> [time=Tue, Aug 30, 2022 11:15 AM]
#### Model Training
- [x] Raw data input test with different types of data(`numeric`, `str`, `bool`, `list`, `dict`, `None`) in df (pass)
- [x] Raw data input test with addtional col names (pass)
- [x] `_join_tables` problems when `path_list_dict` is empty
```
path_list_dict = {}
```
- [x] Test operations on raw column names like `to upper`, `to lower`, `add space`, ...etc.
```
"ACcOu NtnO " -> "ACCOUNTNO"
```

#### Serving
- [x] Serving test with additional col names (pass)
- [x] Serving test with multiple data (pass)
- [x] Serving test with different `json` types of data (`null`, `float`, `string`, `boolean`, `array`, `object`)
```
ValueError: could not convert string to float: 'blablabla'
```
- [ ] Servering post requests logging
- [ ] Log rotate