# INBO CODING CLUB
24 October, 2019

Welcome!

## Share your code snippet

If you want to share your code snippet, copy paste your snippet within a section of three backticks (```)```:

As an **example**:

library(tidyverse)
...

(*you can copy paste this example and add your code further down, but do not fill in your code in this section*)

Your snippets:

### Challenge 1

species_df %>% 
mutate(species_id = str_to_lower(species_id), taxa = str_to_lower(taxa))

id <- species_df %>% 
arrange(species_id) %>% select(species_id)
as.vector(id, mode = "character")

species_df %>% filter(str_length(species_id)>2)

### Set columns `species_id` and `taxa` lowercase
species_df$species_id <- str_to_lower(species_df$species_id)

species_df <- species_df %>% 
  mutate(species_id = str_to_lower(species_id),
         taxa = str_to_lower(taxa))

### sort vector of species_id label alphabetically
str_sort(species_df$species_id)

### extract species_id labels longer than 2 letters
ind <- which(str_length(species_df$species_id) > 2)
species_df$species_id[ind]

### Challenge 2

# genus + species in new column called canonicalName
species_df <- species_df %>%
  mutate(canonicalName = str_c(genus, species, sep=" ") )

# Remove census related label from taxa column
species_df <- species_df %>%
  mutate(taxa = str_replace(taxa, "-not censused", ""))
OR:
species_df_census <- species_df %>%
  filter(str_detect(taxa , pattern = 'not censused') == FALSE)

  ### genus + species in new column called canonicalName
data <- data %>% 
  mutate(canonicalName = str_c(genus, species, sep = " "))

# Remove census related label from taxa column
data <- data %>% 
  mutate(taxa = str_remove(taxa, "-not censused"))

# species_df <- species_df %>% 
  mutate(taxa = str_replace(taxa, '-not censused', ""))

### Challenge 3

# my code...