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# System prepended metadata

title: Parsing the Public Data~ Step 1

---

# Parsing the Public Data~ Step 1
Code help:
* This is the filepath to access the table `/shared/nextrna-data/athena/sra-human-transcriptomic/2021/06/01/375d6f7b-d5ff-40aa-95a1-7ac99b9e3438.csv`
* The terminal command to get the first few colomns of data is `less /shared/nextrna-data/athena/sra-human-transcriptomic/2021/06/01/375d6f7b-d5ff-40aa-95a1-7ac99b9e3438.csv`
* Check README file for updates on the file "parse_data.ibynb"


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# How To Use Terminal to Publish Things On GitHub
* In terminal use `git add "filename"` to add what you want to the branch.
* Next, type `git commit` this will commit the file to the branch
* Then do `git push` and pass in your usernam and password to update the github

## When accessing the CSV
* use the datapath that includes "sandbox"
* This can be found in the onboarding section of the github

## newest terminal code
* `python3 parse_script.py --csv /shared/nextrna-data/athena/sra-human-transcriptomic/2021/08/03/ebc0ccb3-71ae-4456-b915-079796ae4870.csv --nrows 100000 --expcsv /shared/data/sandbox/cwoodside/updated_target_table.csv`
* 

