---
tags: research-computing
---
# Guppy/ Oxford nanopore Dockerfile

Bootstrap: docker
From: nvidia/cuda:11.1-base-ubuntu18.04

%post
PACKAGE_VERSION=5.0.16
BUILD_PACKAGES="wget apt-transport-https"
DEBIAN_FRONTEND=noninteractive

apt-get update && \
apt-get install --yes $BUILD_PACKAGES && \
cd /tmp && \
    wget -q https://mirror.oxfordnanoportal.com/software/analysis/ont_guppy_${PACKAGE_VERSION}-1~bionic_amd64.deb && \
    apt install --yes /tmp/ont_guppy_${PACKAGE_VERSION}-1~bionic_amd64.deb && \
    rm *.deb && \
    apt-get autoremove --purge --yes && \
    apt-get clean && \
    rm -rf /var/lib/apt/lists/*

#Set stub /nobackup directory for Singularity

mkdir -p /nobackup