# Legacy clusterio software

## General
- pvconv (https://pvconv.sourceforge.net/)
- nanconvert https://github.com/spinicist/nanconvert
- idl (https://www.l3harrisgeospatial.com/Software-Technology/IDL)
- icy (https://icy.bioimageanalysis.org/)

## Visualization
- Coin3D https://www.coin3d.org/

## MRI visualization
- medinria https://med.inria.fr/
- MisterI http://www.benoitscherrer.com/MisterI/
- MRmap https://sourceforge.net/projects/mrmap/

## Matlab toolbox
- psychtoolbox http://psychtoolbox.org/
- conn (https://web.conn-toolbox.org/)
- sufstat (https://www.math.mcgill.ca/keith/surfstat/)

## MRI
- predictMS (https://www.hs-koblenz.de/mut/forschung-projekte/labore-projekte/multimodal-imaging-physics/quantitative-mri-in-ms/predictms)

## dMRI
- trackVis/dtk https://trackvis.org/
- MITK-Diffusion https://github.com/MIC-DKFZ/MITK-Diffusion/
- FiberNavigator https://github.com/chamberm/fibernavigator
- FiberCompression https://github.com/scilus/FiberCompression
- SMT https://github.com/ekaden/smt
- TORTOISE https://tortoise.nibib.nih.gov/
- Camino http://camino.cs.ucl.ac.uk/

## enviroments in anaconda
- cpac
- brkraw
- dipy
- Deeplabcut

## killed older versions from:
- mrtrix
- fsl
- freesurfer
- matlab
- itksnap
- afni
- ants