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Project listing

Lists:

  • projects leaders and mattermost username
  • mattermost channel of project
  • video channel of project

APAC

Tutorial for cross decomposition algorithms (e.g. CCA, PLS) in Python #149

  • Léonie Borne, @leonie.borne
  • Mattermost channel: pls-tuto
  • Video channel: PLStuto

3R-BRAIN #173

Prediction of age and intelligence, a basic machine learning model #174

Virtual Neuro Machine (VNM) #177

Diffusion MRI brain masking ("dwi2mask") #195

  • Robert E. Smith, @lestropie
  • Mattermost channel: hbmhack-dwi2mask
  • Video channel: dwi2mask (password to be distributed via MatterMost)

Matching white matter fiber tracts across subjects #204

EMEA

Tracktools #84

VB Index BIDS support / Pretty GUI #102

Mapping the parameter space in EEG/MEG analyses #139

git-annex special remote for the open science framework #156

Bidsme – bidsifier for multimodal datasets #158

TRAMPOLINO: the Swiss Army Knife for tractography #162

Neuroimaging tutorials and resources #166

HyPyP – The Hyperscanning Python Pipeline #187

  • Guillaume Dumas (@deep-introspection)
  • Mattermost channel: hypyp
  • Video channel: hypyp

mrpeek: a sixel-based terminal image viewer for MRtrix3 #202

BIDS Connectivity data schema #203

Integration of EEG in the Connectome-Mapper 3 #214

Americas

BIDS to NiftyTorch: data preparation for deep learning #85

Tools for Combating Citation Bias #120

shimming-toolbox: Ecosystem for real-time shimming with MRI #128

  • Julien Cohen-Adad, @jcohenadad,
  • Ryan Topfer, ==> Not registered!
  • Alexandre D'Astous, @po09i
  • Gaspard Cereza, @gaspardcereza ==> Not registered!
  • Eva Alonso-Ortiz, @evaalonsoortiz
  • Jason Stockmann ==> Not registered!
  • Mattermost channel: hbm-shimming_toolbox
  • Video channel: Shimming
  • Presented

Vector Embeddings of Brain Dynamics #140

  • Jacob Billings, @jacob.billings
  • Mattermost channel: hbm-vectorize_dynamics
  • Video channel: jitsi: VectorizeBrainDynamics
  • Presented

Hopfield Network Library #143

Multi-modality neurofeedback and biofeedback to treat children with ADHD or anxiety #153 (Awaiting)

Python library to handle confounds/covariates #171

BIDS Specification Terms PDF Table Generator #183 (Awaiting)

BIDS Curation GUI #188

ReproSchema and Library #189

Pydra's relatives and friends #192

  • Dorota Jarecka, @dorota
  • Satra Ghosh, @satra
  • Chris Markiewicz, @markiewicz
  • Mathias Goncalves, @mathias
  • Nicol Lo, @nicolocin
  • Mattermost channel: hbmhack-nipype
  • Video channel: pydra
  • Presented
  • Project wrap up

Sharing datasets and pipelines in the Canadian Open Neuroscience Platform #194

Creating a dashboard and recommender system for CONP DataLad datasets and Boutiques pipelines #197

  • Mandana Mazaheri, @mandana_mazaheri
  • Aida Vahdani, @aida
  • Saman Soltani, @samsoltan
  • Mattermost channel: hbm-conp-recommender
  • Video channel: channel name (Awaiting)
  • Presented

PyNets #200

Evaluating the pipeline stability though the libmath fuzzy environment #201

  • Ali Salari, @ali.salari
  • Greg Kiar, @gkiar
  • Valerie Hayot, @valeriehayot
  • Mattermost channel: hbmhack-fuzzy
  • Video channel: channel name (Awaiting)
  • Presented

Building Citizen Science Quality Control Exploratory Data Analysis & Other Tools #210

  • Eric Earl, @earl
  • Anders Perrone,
  • Mattermost channel: hbm-swipes
  • Video channel: channel name (Awaiting)
  • Presented

Multi-hub project

EMEA - Americas

Wacky brain explosions Vol II. #124

BIDS-prov examples #181

physiopy/phys2bids: BIDS formatting of physiological recordings #193

  • Vicente Ferrer, @v.ferrer (EMEA),
  • Eneko Uruñuela, @eurunuela (EMEA),
  • François Lespinasse, @sangfrois (The Americas),
  • Stefano Moia, @smoia (EMEA, The Americas)
  • Mattermost channel: hbmhack-physiopy
  • Video channel: phys2bids
  • Presented

Apac - EMEA - Americas

Learn and Enhance BrainIAK Tutorials: From Basics to Advanced fMRI Analyses #109

  • Manoj Kumar, @manojneuro,
  • Cameron T. Ellis,
  • Qihong Lu,
  • Mihai Capota, @mihaic
  • Sam Nastase, @snastase
  • Mattermost channel: BrainIAKPackage
  • Video channel: BrainIAKPackage
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OHBM Brainhack 2020
Public documents for OHBM Brainhack 2020
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1320

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Email to registered attendees (second pass for those registered aft xx June)

Hi! Thank you for registering to the OHBM hackathon 2020! We are very excited to meet you next week (June 16-18) at the first virtual OHBM Brainhack. Here are a few opportunities to join our growing team and all you need to know to get ready for the event! ![](https://i.imgur.com/zDYkdo2.png =100x) Consider becoming a hackathon buddy You have already attended a brainhack, are keen in welcoming new members in the Brainhack community? Sign up as a Brainhack buddy! You will be paired with an attendee who is coming to their first hackathon. You will spend 1-hour a day with them during the event to help their onboarding. More information here.

Mar 11, 2022
Email ton participants announcing project closing end of Sat (any timezone)

Hello all, The project submission for the OHBM 2020 Brainhack will close this Saturday (today) at midnight anywhere on Earth. Many interesting projects have already been submitted. All kinds of projects facilitating collaboration, openness, and reproducibility within the open neuroscience community are welcome. If you'd like, there is still time to submit your project: Submit here! If you have any question check our FAQ or get in touch.

Mar 11, 2022
Virtual registration desk

Welcome! Before we get started, we would like for you to create your “virtual conference tag” and start meeting your fellow attendees! Please follow the steps: Join the hbm-hackathon channel and say hi! If you are not familiar with mattermost, we recommend this short video. Update your mattermost profile: in the top left hand corner next to your photo click to the 3 horizontal lines and then "Account Settings". Please include: a picture of your choice in "Profile Picture", your first name, last name and pronoun (she/her he/his they/theirs or any combinations) in "Full Name". your affiliation in "Position". Update your Crowdcast/Zoom profile with a picture of your choice, your name, affiliation and pronoun

Mar 11, 2022
Object: OHBM Brainhack project submission open

Hi! Thank you for registering to the OHBM hackathon 2020! We are very excited to meet you at the first virtual OHBM Brainhack, June 16-18. ![](https://i.imgur.com/PwMnMfP.png =100x) Project submissions are now open: submit here! During the OHBM Brainhack, attendees will gather into sub-groups and collaboratively work on projects of their choice. As an attendee, you have the opportunity to submit a project. All kinds of projects facilitating collaboration, openness, and reproducibility within the open neuroscience community are very welcome.

Mar 11, 2022
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