# Ideas to improve SDG ## SDG ABC (Anchor based (Quality) Control) - Accelerate k-mer projection from kci: add to each kmer entry the offset of the next k-mer if only one of the four possible k-mers exist -> avoid lookup in unitig regions. ## Haplotype-specific assembly - Run strider before anchor creation. - Add connections between anchors in the anchor sdg, both when in same contig and when in consecutive directly connected contigs (i.e. all fw-reached anchors up to a radius, connected at their smallest distance). This can help treat the problem as anchor-connectivity, and provide an assumed order. In simple genomes, reviewing/editing this connectivity should solve the problem altogether. - Recruit threads to unitigs. -