# Omni_clustering data

## Input files
No input files expected. Please load the data within the script.

## Output files

| Name | Type | Fields | Example |
|:---------:| ------ | ----------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------ |
| counts | mtx.gz | cells -> columns; genes --> rows | [koh](https://renkulab.io/projects/omnibenchmark/omni_clustering/koh/files/blob/src/config.yaml) |
| meta | json | "pheno_id"; "cell_id" | [koh](https://renkulab.io/projects/omnibenchmark/omni_clustering/koh/files/blob/src/config.yaml) |
| data_info | json | "link"; "tissue"; "sequencing_protocol"; "n_cells"; "n_genes"; "n_cluster"; "description" | [koh](https://renkulab.io/projects/omnibenchmark/omni_clustering/koh/files/blob/src/config.yaml) |
| feature | json | "gene_id" | [koh](https://renkulab.io/projects/omnibenchmark/omni_clustering/koh/files/blob/src/config.yaml) |

**Keywords**: "omni_clustering_data"

## Project

**Benchmark_name**: "omni_clustering"

## Example config.yaml

---
data:
    name: "koh"
    title: "Koh single cell dataset"
    description: "FACS purified H7 human embryonic stem cells in different differention stages."
    keywords: ["omni_clustering_data"]
script: "src/koh.R"
outputs:
    template: "data/${name}/${name}_${out_name}.${out_end}"
    files:
        counts: 
            end: "mtx.gz"
        data_info:
            end: "json"
        meta:
            end: "json"
        feature:
            end: "json"
benchmark_name: "omni_clustering"

###### tags: `checks` `renku`