New system setup

###### tags: `linux` `gpu` # New system setup [TOC] ## Utilities ```bash= # windows switch only in current workspace gsettings set org.gnome.shell.app-switcher current-workspace-only true # acess settings chmod 700 ~/.ssh chmod 644 ~/.ssh/config chmod 600 ~/.ssh/id_rsa chmod 644 ~/.ssh/id_rsa.pub ``` The following command will generate a new 4096 bits SSH key pair with your email address as a comment: ```bash= ssh-keygen -t rsa -b 4096 -C "aravindsugunan@gmail.com" # For copying ssh pub key to server ssh-copy-id remote_username@server_ip_address ``` Jupyter-Notebook ```bash= sudo apt-get install jupyter-notebook ``` Jupyter-Notebook over ssh ```bash= ssh USERNAME@domain.suffix -L8223:localhost:8223 jupyter notebook --no-browser --port 8223 ``` Multiple time zones for gnome ```bash= sudo apt install gnome-clocks ``` ## Root for ubuntu 18.04 Install guide webpage : [https://root.cern/install/](https://root.cern/install/) Releases : [All Releases](https://root.cern/install/all_releases/) ```bash= wget https://root.cern/download/root_v6.22.02.Linux-ubuntu18-x86_64-gcc7.5.tar.gz tar -C ~/ -xvzf root_v6.22.02.Linux-ubuntu18-x86_64-gcc7.5.tar.gz echo "">>~/.bashrc echo "## ROOT SETUP">>~/.bashrc echo "source ~/root/bin/thisroot.sh">>~/.bashrc ``` ## CernBox client  [CernBOX Client Page](https://cernbox.web.cern.ch/cernbox/downloads/) #### Ubuntu 18.04 bionic-beaver ```bash= export VERSION=`lsb_release -rs` # example: the command above will set 18.04 if you are on Bionic Beaver wget -q -O- https://cernbox.cern.ch/cernbox/doc/Linux/repo/Ubuntu_${VERSION}/Release.key | sudo apt-key add - sudo sh -c "echo 'deb http://cernbox.cern.ch/cernbox/doc/Linux/repo/Ubuntu_${VERSION}/ /' > /etc/apt/sources.list.d/cernbox-client.list" sudo apt-get update sudo apt-get install cernbox-client ``` ## TIFR SSL-VPN ```bash= wget ftp://ftp.tifr.res.in/pulse_secure_linux_package/pulse-9.1R3.x86_64.deb sudo dpkg -i pulse-9.1R3.x86_64.deb sudo apt-get install libwebkitgtk-1.0-0 # to install dependancies for GUI run bash /usr/local/pulse/PulseClient_x86_64.sh install_dependency_packages ``` VPN adress ``` https://sslvpn.tifr.res.in/tifruser ``` ## Skype Dowload client [here](https://www.skype.com/en/get-skype/) ```bash= wget https://go.skype.com/skypeforlinux-64.deb sudo dpkg --install skypeforlinux-64.deb ``` ## Zoom Dowload client [here](https://zoom.us/download) ```bash= wget https://zoom.us/client/latest/zoom_amd64.deb sudo apt-get install libxcb-xtest0 sudo dpkg -i zoom_amd64.deb ``` ## CUDA Setup Installation Documentation may be found [here](https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html) #### Preinstalation steps Purge old nvidia/cuda instalations ```bash= sudo apt-get --purge -y remove 'cuda*' sudo apt-get --purge -y remove 'nvidia*' sudo apt-get autoremove ``` Install the linux headers ```bash= sudo apt-get install linux-headers-$(uname -r) ``` Download and setup the package manager (see [here](https://developer.nvidia.com/cuda-downloads)) Two options .deb network ```bash= wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-ubuntu1804.pin sudo mv cuda-ubuntu1804.pin /etc/apt/preferences.d/cuda-repository-pin-600 sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/7fa2af80.pub sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/ /" sudo apt-get update sudo apt-get -y install cuda ``` and .deb local ```bash= wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-ubuntu1804.pin sudo mv cuda-ubuntu1804.pin /etc/apt/preferences.d/cuda-repository-pin-600 wget https://developer.download.nvidia.com/compute/cuda/11.1.0/local_installers/cuda-repo-ubuntu1804-11-1-local_11.1.0-455.23.05-1_amd64.deb sudo dpkg -i cuda-repo-ubuntu1804-11-1-local_11.1.0-455.23.05-1_amd64.debsudo apt-key add /var/cuda-repo-ubuntu1804-11-1-local/7fa2af80.pub sudo apt-get update sudo apt-get -y install cuda ``` Notes : there will be a prompt that will ask about secure boot permission for 3rd party drivers and some other MOC acesss ..And be careful at the next reboot to allow those permissions activate at BIOS ```bash= reboot ``` #### Post Installation steps Add to `*.bashrc*` ```bash= export PATH=/usr/local/cuda-11.1/bin${PATH:+:${PATH}} export LD_LIBRARY_PATH=/usr/local/cuda-11.1/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}} ``` #### Validation Before continuing, it is important to verify that the CUDA toolkit can find and communicate correctly with the CUDA-capable hardware. To do this, you need to compile and run some of the included sample programs. ```bash= cuda-install-samples-11.1.sh cd NVIDIA_CUDA-11.1_Samples make -j 8 cd $PWD/bin/x86_64/linux/release ./deviceQuery ./bandwidthTest ``` Checking Driver & nvcc version ```bash= cat /proc/driver/nvidia/version nvcc -V ``` ## Network Printer at D210 Install the driver and suff for brother printer from this url ```bash= mkdir ~/Documents/brotherPrinter cd ~/Documents/brotherPrinter wget https://download.brother.com/welcome/dlf006893/linux-brprinter-installer-2.2.2-1.gz sudo -i XXXXXXXXXXXX cd ~/Documents/brotherPrinter gunzip linux-brprinter-installer-*.gz sudo bash linux-brprinter-installer-* ``` Note : model name MCF-L5900DW When you see the message "Will you specify the DeviceURI ?", For Network Users: Choose Y(Yes) and DeviceURI number. The IP for the printer is `155.144.54.195` ## Fingerprint setup on XPS 15 9500 Source : [reddit post](https://www.reddit.com/r/Dell/comments/hpzsd2/how_to_get_the_fingerprint_reader_working_on_dell/) and [ubuntu forum post](https://askubuntu.com/questions/1049526/fingerprint-activation-on-ubuntu-18-04) ```bash= # Updated deb file may be found at : wget http://dell.archive.canonical.com/updates/pool/public/libf/libfprint-2-tod1-goodix/libfprint-2-tod1-goodix_0.0.4-0ubuntu1somerville1_amd64.deb #might have to install some dependancies sudo dpkg -i libfprint-2-tod1-goodix_0.0.4-0ubuntu1somerville1_amd64.deb # go to settings/user to enroll fprints, verified and works [ or maybe do it using the reddit post methord, not verified] # to test the match fprintd-verify ``` ***Note*** : only the last enrolled fprint gets validated ## Audio driver reinstall [source](https://itectec.com/ubuntu/ubuntu-realtek-audio-drivers-for-ubuntu/) Remove the ALSA packages. ```bash= sudo apt-get --purge remove linux-sound-base alsa-base alsa-utils ``` Reinstall the same packages. ```bash= sudo apt-get install linux-sound-base alsa-base alsa-utils ```  Reboot. ```bash= sudo reboot ``` ## GitHub Setup ``` git config --global user.email "aravindsugunan@gmail.com" git config --global user.name "Aravind Sugunan ``` ## HEPMC3 [Source](https://gitlab.cern.ch/hepmc/HepMC3) ``` ``` ## Pythia8 Pythia Instalation [source]() ```bash= cd ~ wget http://home.thep.lu.se/~torbjorn/pythia8/pythia8303.tgz cd pythia830* ./configure --with-root-bin=~/root/bin/ make -j 4 ``` Bashrc setup : No effect as of now .. need to debug ``` ## PYTHIA SETUP export PYTHIA8=~/pythia8303 export PATH=$PYTHIA8/bin:${PATH} export LD_LIBRARY_PATH=$PYTHIA8/lib:${LD_LIBRARY_PATH} ``` ## Setup SSH-Login Generate a new SSH key pair ```bash= ssh-keygen -t rsa -b 4096 -C "aravindsugunan@gmail.com" ``` copy the ssh-key to server end ```bash= ssh-copy-id remote_username@server_ip_address ``` Once the user is authenticated, the public key will be appended to the remote user authorized_keys file and connection will be closed. Workaround if ssh-copy-id is not present ```bash= cat ~/.ssh/id_rsa.pub | ssh remote_username@server_ip_address "mkdir -p ~/.ssh && chmod 700 ~/.ssh && cat >> ~/.ssh/authorized_keys && chmod 600 ~/.ssh/authorized_keys" ``` ## Vim .vimrc ``` :hi Search ctermbg=Cyan ctermfg=Black :set autoindent :syntax on :set hlsearch :set number au BufReadPost * if line("'\"") > 1 && line("'\"") <= line("$") | exe "normal! g'\"" | endif ``` ## Astyle [website](http://astyle.sourceforge.net/) - Download from the Sourceforge Website - Or copy from the filestorage ```bash= tar -xvf cernbox/fileStorage/sources/astyle_3.1_linux.tar.gz astyle/ cd astyle/build/gcc/ make # for installing sudo make install # or echo "">>~/.bashrc echo "## ASTYLE">>~/.bashrc echo "export PATH="`pwd`"/bin:\$PATH">>~/.bashrc ``` ## Setup Jupyter over ssh ```bash= # connect to server with a port forward to access the jupyter notebook server ssh igpu -L8282:localhost:8282 jupyter notebook --no-browser --port 8282 ```