---
# System prepended metadata

title: RDM4mic Meeting September 2023 Münster

---

:::info
## RDM4mic Meeting Münster
**Date:** 19.09-21.09.2023
**Location:** Multiscale Imaging Centre, University of Münster, Röntgenstraße 16
48149 Münster ([click](https://www.uni-muenster.de/Cells-in-Motion/about/multiscale-imaging-centre.html))
**Time Zone:** CEST
:::

:::success
## Links
* [General Information](#General-Information)
* [Program](#Program-minor-changes-possible)
* [Catering](#Catering)
* [Zoom](#Zoom)
* [Directions](#Directions)
:::

## General Information
Due to the great interest, we will hold the meeting in parts as a hybrid event. This means that we will stream the presentations via Zoom. As we have some program points for which a hybrid solution is difficult to implement, we cannot guarantee that participation via Zoom is feasible for those.

We will not have a separate beginner session with general Q&A. We have decided to offer a separate online meeting for this in the near future. We will inform you via the usual channels.

**For all presenters:** We plan to record your talks. Please give us your agreement in a separate mail (Thomas will write to you if not already done).

## Program (minor changes possible)
:::spoiler Tuesday 19. September
| Time | Session | Moderator |
| -------- | -------- | -------- |
| **13.00 – 13:30**     | Welcome & Recap of last Meetings, Introduction round new members |Susanne|
|13:30 - 14:30|FlashTalks||
|**Session 1:**| **Metadata annotations in OMERO**| Thomas
|14:30 – 15:00|	Overview existing Tools |I3D:bio|
|15:00 – 16:00|	General intro about metadata and Annotations/Ontologies|Susanne, Tom|
Break (15min)
|16:15 – 16:45|	Bulk Metadata Annotations in OMERO using Tabbles |Thomas|
|16:45 – 17:15|	Open Discussion
|Break (15min)|||
|17:30 – 18:00|	Open Discussion / Tour of the MIC|Thomas|
:::

:::spoiler Wednesday 20. September
| Time | Session | Moderator / Presenter |
| -------- | -------- | -------- |
|**Session 2:**| **Analysis and working Pipelines/workflows in OMERO**||
|09:30 - 10:00|Pipeline for cell-fate classification of cancer cells|Gebhard|
|10:30 - 11:00|In place imported data and image analysis|Tom|
|11:00 - 11:30|Cellprofiler Pipeline inkl. DeepLearning Tools / Python integration for batch analysis|Sarah|
|break 30 (30min)|||
|12:00 - 12:30|Cell detection via deep transfer learning with OMERO|Jonas|
|12:30 - 13:00|Open Discussion||
|13:00 - 13:45|**LUNCH**||
|**Session 3:**|**Hackathon**|Tom|
|13:45 - 18:00|Ontologies & Metadata Annotations|
|19:00|Social Evening||
:::
:::spoiler Thursday 21. September
| Time | Session | Moderator |
| -------- | -------- | -------- |
|**Session 4:**|**Workshop / Hackathon**|Susanne|
|09:30 - 10:45|Setting up OMERO - Guidlines & Best-Practices / Training Material collection|I3D:bio|
|break (15min)|||
|11:00 - 13:00|Ontologies & Metadata Annotations / Topics on demand|Tom / all|
:::
## Catering
The catering will be provided by "Herd und Seele" Catering during the whole meeting. On Wednesday 20.09. there will be a lunch buffet. With all food there will be vegan alternatives.

**Special thanks to German BioImaging for sponsoring the catering!!!**

## Zoom
The talks of the meeting will be streamed via zoom. The link is for the whole meeting the same.

**Zoom Link:** https://wwu.zoom-x.de/j/68148607065?pwd=c1dyeUh0aWR5TjhCdStHcFZxK3VKdz09
**Meeting-ID:** 681 4860 7065
**Passwort:** we will send you the password via mail prior to the meeting

## Directions

To arrive at the Multiscale Imaging Centre where the meeting takes place, take a Taxi from Münster's Central Train Station (a 15-minutes ride to Röntgenstraße 16). Alternatively, use bus line 5 (about a 20-minutes ride, 8 stops, leaving every 20 minutes), getting off at  "Schreiberstraße" station. The meeting place is 5 minutes walk away from the bus station.

![](https://hackmd.io/_uploads/B1DRTTEA2.jpg)

## Sponsors
![](https://hackmd.io/_uploads/r1YqA6EC2.png)



