# README
### ChromHMM Annotation
data path: outerspace/PEAS_trying/reco/runSTIAN0.0/proc/ChromHMM
cellmark*.txt: information of histone files used for different chromHmm models
OUTPUTSAMPLE*: output files from ChromHMM
CHROMSIZES: hg38.txt
data/: histone files used for cell mark( raw files and binary files)

### PEAS feature extraction
data path: data path:outerspace/PEAK_Feature_Extraction
This folder contains different cell type's PEAS feature extraction results

### Encode pipeline ATAC-Seq output
data path: outerspace/PEAS_trying/depo/pipeline_outputs

### Footprint output
data path: data path: outerspace/PEAS_trying/depo/pipeline_outputs