---
# System prepended metadata

title: ASG Symbiodinium

---

# ASG Symbiodinium

## jaBlaWell11
* ### Reads:
    * Total HiFi...
        * Bases (Mbp) = 23,966.83
        * Reads = 
    * Total HiC (Mbp) = 266,847.83
* ### Host:
    * Total HiFi (Kraken)...
        * Base Pair Fraction  = 93.8%
        * Bases (Mbp) = 22,476.82
        * Reads = 2,706,213
    * Estimated coverage (Genomescope) = 30.5
    * Estimated genome size (Mbp) = 344.90
    * Model Fit = 78.66%-95.88%
    ![](https://i.imgur.com/LeHCbYv.png)
    ![](https://i.imgur.com/AfhfdRI.png)
    ![](https://i.imgur.com/59uBI0E.png)
    ![](https://i.imgur.com/ozZVkdd.png)

| Assembler                  | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Metazoa)                             |
| -------------------------- | ------------ | -------------------- | --------- | ------------- | ------------------------------------------- |
| Hifiasm (Holobiont) + YAHS | 3,952.51     | 708.39               | 272.17    | -             | C:95.3%[S:93.8%,D:1.5%],F:2.1%,M:2.6%,n:954 |
| HiCanu                     |              |                      |           |               |                                             |
| Hifiasm                    |       4,092.87       | 4.18                     |     0.77      |      29.9         |                    C:95.0%[S:90.6%,D:4.4%],F:2.3%,M:2.7%,n:954                         |







* ### Cobiont:
    * Total HiFi (Kraken)...
        * Base Pair Fraction = 3.9%
        * Bases (Mbp) = 940.58
        * Reads = 114,730
    * Estimated coverage (Genomescope) = 35.8
    * Estimated genome size (Mbp) = 2.58
    * Model Fit = 37.56%-84.12%


    ![](https://i.imgur.com/Hru7rxk.png)
    ![](https://i.imgur.com/GoQ866f.png)
    ![](https://i.imgur.com/3DjS25R.png)
    ![](https://i.imgur.com/iGVPhJS.png)


| Assembler           | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped |
| ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- |
| Hifiasm (Holobiont) |              |                      |     |               |                   |                      |                   |
| Hifiasm             |   27.24           |     0.09                 |  0.02   |    1.42           |      C:2.9%[S:2.9%,D:0.0%],F:0.0%,M:97.1%,n:171             |     386.79                 |      41.1%             |
| Hifiasm-Meta        | 92.53          | 0.18                 | 0.03    |         1.35      |     C:8.2%[S:7.6%,D:0.6%],F:1.2%,M:90.6%,n:171              |       261.21                |       27.8%             |



---

## jaRicFlor
* ### Reads:
   * Total HiFi...
        * Bases (Mbp) = 
        * Reads = 
    * Total HiC (Mbp) = 
* ### Host:
    * Total HiFi (Kraken)...
        * Base Pair Fraction  = 
        * Bases (Mbp) = 
        * Reads = 
    * Estimated coverage (Genomescope) = 
    * Estimated genome size (Mbp) = 
    * Model Fit = 
* ### Cobiont:
    * Total HiFi (Kraken)...
        * Base Pair Fraction = 
        * Bases (Mbp) = 
        * Reads = 
    * Estimated coverage (Genomescope) = 
    * Estimated genome size (Mbp) = 
    * Model Fit = 

| Assembler           | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped |
| ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- |
| Hifiasm (Holobiont) |              |                      |     |               |                   |                      |                   |
| Hifiasm             |              |                      |     |              |                   |                      |                  |
| Hifiasm-Meta        |          |                 |     |               |                   |                       |                    |

---

## xb
* ### Reads:
   * Total HiFi...
        * Bases (Mbp) = 
        * Reads = 
    * Total HiC (Mbp) = 
* ### Host:
    * Total HiFi (Kraken)...
        * Base Pair Fraction  = 
        * Bases (Mbp) = 
        * Reads = 
    * Estimated coverage (Genomescope) = 
    * Estimated genome size (Mbp) = 
    * Model Fit = 
* ### Cobiont:
    * Total HiFi (Kraken)...
        * Base Pair Fraction = 
        * Bases (Mbp) = 
        * Reads = 
    * Estimated coverage (Genomescope) = 
    * Estimated genome size (Mbp) = 
    * Model Fit = 

| Assembler           | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped |
| ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- |
| Hifiasm (Holobiont) |              |                      |     |               |                   |                      |                   |
| Hifiasm             |              |                      |     |              |                   |                      |                  |
| Hifiasm-Meta        |          |                 |     |               |                   |                       |                    |





