# ASG Symbiodinium ## jaBlaWell11 * ### Reads: * Total HiFi... * Bases (Mbp) = 23,966.83 * Reads = * Total HiC (Mbp) = 266,847.83 * ### Host: * Total HiFi (Kraken)... * Base Pair Fraction = 93.8% * Bases (Mbp) = 22,476.82 * Reads = 2,706,213 * Estimated coverage (Genomescope) = 30.5 * Estimated genome size (Mbp) = 344.90 * Model Fit = 78.66%-95.88% ![](https://i.imgur.com/LeHCbYv.png) ![](https://i.imgur.com/AfhfdRI.png) ![](https://i.imgur.com/59uBI0E.png) ![](https://i.imgur.com/ozZVkdd.png) | Assembler | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Metazoa) | | -------------------------- | ------------ | -------------------- | --------- | ------------- | ------------------------------------------- | | Hifiasm (Holobiont) + YAHS | 3,952.51 | 708.39 | 272.17 | - | C:95.3%[S:93.8%,D:1.5%],F:2.1%,M:2.6%,n:954 | | HiCanu | | | | | | | Hifiasm | 4,092.87 | 4.18 | 0.77 | 29.9 | C:95.0%[S:90.6%,D:4.4%],F:2.3%,M:2.7%,n:954 | * ### Cobiont: * Total HiFi (Kraken)... * Base Pair Fraction = 3.9% * Bases (Mbp) = 940.58 * Reads = 114,730 * Estimated coverage (Genomescope) = 35.8 * Estimated genome size (Mbp) = 2.58 * Model Fit = 37.56%-84.12% ![](https://i.imgur.com/Hru7rxk.png) ![](https://i.imgur.com/GoQ866f.png) ![](https://i.imgur.com/3DjS25R.png) ![](https://i.imgur.com/iGVPhJS.png) | Assembler | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped | | ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- | | Hifiasm (Holobiont) | | | | | | | | | Hifiasm | 27.24 | 0.09 | 0.02 | 1.42 | C:2.9%[S:2.9%,D:0.0%],F:0.0%,M:97.1%,n:171 | 386.79 | 41.1% | | Hifiasm-Meta | 92.53 | 0.18 | 0.03 | 1.35 | C:8.2%[S:7.6%,D:0.6%],F:1.2%,M:90.6%,n:171 | 261.21 | 27.8% | --- ## jaRicFlor * ### Reads: * Total HiFi... * Bases (Mbp) = * Reads = * Total HiC (Mbp) = * ### Host: * Total HiFi (Kraken)... * Base Pair Fraction = * Bases (Mbp) = * Reads = * Estimated coverage (Genomescope) = * Estimated genome size (Mbp) = * Model Fit = * ### Cobiont: * Total HiFi (Kraken)... * Base Pair Fraction = * Bases (Mbp) = * Reads = * Estimated coverage (Genomescope) = * Estimated genome size (Mbp) = * Model Fit = | Assembler | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped | | ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- | | Hifiasm (Holobiont) | | | | | | | | | Hifiasm | | | | | | | | | Hifiasm-Meta | | | | | | | | --- ## xb * ### Reads: * Total HiFi... * Bases (Mbp) = * Reads = * Total HiC (Mbp) = * ### Host: * Total HiFi (Kraken)... * Base Pair Fraction = * Bases (Mbp) = * Reads = * Estimated coverage (Genomescope) = * Estimated genome size (Mbp) = * Model Fit = * ### Cobiont: * Total HiFi (Kraken)... * Base Pair Fraction = * Bases (Mbp) = * Reads = * Estimated coverage (Genomescope) = * Estimated genome size (Mbp) = * Model Fit = | Assembler | Length (Mbp) | Longest Contig (Mbp) | N50 (Mbp) | Mean Coverage | BUSCO (Alveolata) | Bases Unmapped (Mbp) | Fraction Unmapped | | ------------------- | ------------ | -------------------- | --- | ------------- | ----------------- | -------------------- | ----------------- | | Hifiasm (Holobiont) | | | | | | | | | Hifiasm | | | | | | | | | Hifiasm-Meta | | | | | | | |