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# System prepended metadata

title: Kinship -  Workflow to Isolate Microhaplotype Loci

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# Kinship -  Workflow to Isolate Microhaplotype Loci
Last edit: Kinship Group 10/28/2021
**Data:** MEC_lab_shared_resources/Data_analysis_Resources/Relatedness_working_group/Meeting_docs/2021.10.28/populations.haps.vcf
**Markdown:** MEC_lab_shared_resources/Data_analysis_Resources/Relatedness_working_group/Meeting_docs/2021.10.28/Kinship_markdown.Rmd
#### Workflow 
1. Export it to VCF format and filter. 
1. Get haplotype information
1. Convert to PLINK 
1. Inport into SEQUOIA 

If there are mutliple alleles, it may be difficult to use SEQUOIA.

For CKRsim, there is a lot of formatting that needs to be done forehand but it can account for more alleles. 
* 10 alleles for each microhaplotype 