---
title: DRAM setup (24-Mar-2022)
---

# DRAM setup (24-Mar-2022)
https://github.com/shafferm/DRAM

[toc]

DB made as detailed and put on figshare.

# Getting built DB
It's about 13GB compressed and around 32GB uncompressed. Can be downloaded and unpacked with the following:

curl -L -o DRAM_data.tar.gz https://figshare.com/ndownloader/files/34505828

tar -xzvf DRAM_data.tar.gz

The locations will need to be set, telling DRAM where these are. This can be done something like this (might need to be modified depending on where the databases are, and with the caveat that things still aren't working for me anyway as noted below in the testing section):

DRAM-setup.py set_database_locations \
              --kofam_hmm_loc DRAM_data/kofam_profiles.hmm \
              --kofam_ko_list_loc DRAM_data/kofam_ko_list.tsv \
              --pfam_db_loc DRAM_data/pfam.mmspro \
              --pfam_hmm_dat DRAM_data/Pfam-A.hmm.dat.gz \
              --dbcan_db_loc DRAM_data/dbCAN-HMMdb-V10.txt \
              --dbcan_fam_activities DRAM_data/CAZyDB.07292021.fam-activities.txt \
              --vogdb_db_loc DRAM_data/vog_latest_hmms.txt \
              --vog_annotations DRAM_data/vog_annotations_latest.tsv.gz \
              --viral_db_loc DRAM_data/refseq_viral.20220324.mmsdb \
              --peptidase_db_loc DRAM_data/peptidases.20220324.mmsdb \
              --genome_summary_form_loc DRAM_data/genome_summary_form.20220324.tsv \
              --module_step_form_loc DRAM_data/module_step_form.20220324.tsv \
              --etc_module_database_loc DRAM_data/etc_mdoule_database.20220324.tsv \
              --function_heatmap_form_loc DRAM_data/function_heatmap_form.20220324.tsv \
              --amg_database_loc DRAM_data/amg_database.20220324.tsv \
              --update_description_db

And can check with:

DRAM-setup.py print_config

# Steps that were taken on 24-Mar-2022

## Install

### `DRAM-setup.py prepare_databases`

wget https://raw.githubusercontent.com/shafferm/DRAM/master/environment.yaml
conda env create -f environment.yaml -n DRAM

conda activate DRAM

DRAM-setup.py version | sed 's/^/# /'
# 1.3.4

DRAM-setup.py prepare_databases --output_dir DRAM_data --skip_uniref --threads 30 --verbose

Finished in 60 minutes, had this warning message, but I think it took care of it (full output is at the bottom of this page):

0:54:09.872396: DRAM databases and forms downloaded
0:54:09.883266: Files moved to final destination
/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/database_handler.py:51: UserWarning: Database does not exist at path None
  warnings.warn('Database does not exist at path %s' % self.description_loc)
0:54:09.942834: DRAM description database populated
0:54:22.410448: Database preparation completed

### `DRAM-setup.py print_config`

And databases seem to be set:

DRAM-setup.py print_config

Processed search databases
KEGG db: None
KOfam db: /home/mike/dram-test/DRAM_data/kofam_profiles.hmm
KOfam KO list: /home/mike/dram-test/DRAM_data/kofam_ko_list.tsv
UniRef db: None
Pfam db: /home/mike/dram-test/DRAM_data/pfam.mmspro
dbCAN db: /home/mike/dram-test/DRAM_data/dbCAN-HMMdb-V10.txt
RefSeq Viral db: /home/mike/dram-test/DRAM_data/refseq_viral.20220324.mmsdb
MEROPS peptidase db: /home/mike/dram-test/DRAM_data/peptidases.20220324.mmsdb
VOGDB db: /home/mike/dram-test/DRAM_data/vog_latest_hmms.txt

Descriptions of search database entries
Pfam hmm dat: /home/mike/dram-test/DRAM_data/Pfam-A.hmm.dat.gz
dbCAN family activities: /home/mike/dram-test/DRAM_data/CAZyDB.07292021.fam-activities.txt
VOG annotations: /home/mike/dram-test/DRAM_data/vog_annotations_latest.tsv.gz

Description db: /home/mike/dram-test/DRAM_data/description_db.sqlite

DRAM distillation sheets
Genome summary form: /home/mike/dram-test/DRAM_data/genome_summary_form.20220324.tsv
Module step form: /home/mike/dram-test/DRAM_data/module_step_form.20220324.tsv
ETC module database: /home/mike/dram-test/DRAM_data/etc_mdoule_database.20220324.tsv
Function heatmap form: /home/mike/dram-test/DRAM_data/function_heatmap_form.20220324.tsv
AMG database: /home/mike/dram-test/DRAM_data/amg_database.20220324.tsv

## Packing up

tar -czvf DRAM_data.tar.gz DRAM_data/

Added to figshare here:

## Testing

### Getting a test genome

# getting a test genome
curl -L -o GCF_000005845.2.fasta.gz https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz

gunzip GCF_000005845.2.fasta.gz

### `DRAM.py annotate`

# running annotate
DRAM.py annotate -i GCF_000005845.2.fasta -o test-DRAM-output

Failed at ~30 minutes, full output here:

1 fastas found
2022-03-24 17:52:20.401705: Annotation started
0:00:00.006870: Retrieved database locations and descriptions
0:00:00.006913: Annotating GCF_000005845.2
0:00:37.062490: Turning genes from prodigal to mmseqs2 db
0:00:39.102467: Getting hits from kofam
0:28:23.441931: Getting forward best hits from peptidase
0:28:31.786483: Getting reverse best hits from peptidase
0:28:32.604565: Getting descriptions of hits from peptidase
/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/database_handler.py:81: UserWarning: No descriptions were found for your id's. Does this MER0356400 look like an id from peptidase_description
  warnings.warn("No descriptions were found for your id's. Does this %s look like an id from %s" % (list(ids)[0],
Traceback (most recent call last):
  File "/home/mike/miniconda3/envs/DRAM/bin/DRAM.py", line 189, in <module>
    args.func(**args_dict)
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 1039, in annotate_bins_cmd
    annotate_bins(list(set(fasta_locs)), output_dir, min_contig_size, prodigal_mode, trans_table, bit_score_threshold,
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 1078, in annotate_bins
    all_annotations = annotate_fastas(fasta_locs, output_dir, db_handler, min_contig_size, prodigal_mode, trans_table,
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 1012, in annotate_fastas
    annotate_fasta(fasta_loc, fasta_name, fasta_dir, db_handler, min_contig_size, prodigal_mode, trans_table,
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 920, in annotate_fasta
    annotations = annotate_orfs(gene_faa, db_handler, tmp_dir, start_time, custom_db_locs, custom_hmm_locs,
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 820, in annotate_orfs
    annotation_list.append(do_blast_style_search(query_db, db_handler.db_locs['peptidase'], tmp_dir,
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 683, in do_blast_style_search
    hits = formater(hits, header_dict)
  File "/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/annotate_bins.py", line 187, in get_peptidase_description
    header = header_dict[peptidase_hit]
KeyError: 'MER0356400'

I wrote in to this issue here: https://github.com/WrightonLabCSU/DRAM/issues/158

## `DRAM-setup.py prepare_databases` full output

DRAM-setup.py prepare_databases --output_dir DRAM_data --skip_uniref --threads 30 --verbose

2022-03-24 16:34:11.976574: Database preparation started
Downloading dbCAN family activities from : https://bcb.unl.edu/dbCAN2/download/Databases/V10/CAZyDB.07292021.fam-activities.txt
downloading https://bcb.unl.edu/dbCAN2/download/Databases/V10/CAZyDB.07292021.fam-activities.txt
--2022-03-24 16:34:11--  https://bcb.unl.edu/dbCAN2/download/Databases/V10/CAZyDB.07292021.fam-activities.txt
Resolving bcb.unl.edu (bcb.unl.edu)... 129.93.147.58
Connecting to bcb.unl.edu (bcb.unl.edu)|129.93.147.58|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 68035 (66K) [text/plain]
Saving to: ‘DRAM_data/CAZyDB.07292021.fam-activities.txt’

DRAM_data/CAZyDB.07292021.fam-activities. 100%[====================================================================================>]  66.44K  --.-KB/s    in 0.1s

2022-03-24 16:34:12 (500 KB/s) - ‘DRAM_data/CAZyDB.07292021.fam-activities.txt’ saved [68035/68035]

downloading ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz
--2022-03-24 16:34:12--  ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz
           => ‘DRAM_data/Pfam-A.hmm.dat.gz’
Resolving ftp.ebi.ac.uk (ftp.ebi.ac.uk)... 193.62.193.138
Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/databases/Pfam/current_release ... done.
==> SIZE Pfam-A.hmm.dat.gz ... 514890
==> PASV ... done.    ==> RETR Pfam-A.hmm.dat.gz ... done.
Length: 514890 (503K) (unauthoritative)

Pfam-A.hmm.dat.gz                         100%[====================================================================================>] 502.82K   645KB/s    in 0.8s

2022-03-24 16:34:15 (645 KB/s) - ‘DRAM_data/Pfam-A.hmm.dat.gz’ saved [514890]

Downloading dbCAN from: http://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V10.txt
downloading http://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V10.txt
--2022-03-24 16:34:15--  http://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V10.txt
Resolving bcb.unl.edu (bcb.unl.edu)... 129.93.147.58
Connecting to bcb.unl.edu (bcb.unl.edu)|129.93.147.58|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V10.txt [following]
--2022-03-24 16:34:15--  https://bcb.unl.edu/dbCAN2/download/dbCAN-HMMdb-V10.txt
Connecting to bcb.unl.edu (bcb.unl.edu)|129.93.147.58|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 100147232 (96M) [text/plain]
Saving to: ‘./dbCAN-HMMdb-V10.txt’

./dbCAN-HMMdb-V10.txt                     100%[====================================================================================>]  95.51M  11.2MB/s    in 8.9s

2022-03-24 16:34:24 (10.8 MB/s) - ‘./dbCAN-HMMdb-V10.txt’ saved [100147232/100147232]

0:00:15.785746: dbCAN database processed
downloading ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
--2022-03-24 16:34:27--  ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
           => ‘DRAM_data/database_files/Pfam-A.full.gz’
Resolving ftp.ebi.ac.uk (ftp.ebi.ac.uk)... 193.62.193.138
Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/databases/Pfam/current_release ... done.
==> SIZE Pfam-A.full.gz ... 15188156081
==> PASV ... done.    ==> RETR Pfam-A.full.gz ... done.
Length: 15188156081 (14G) (unauthoritative)

Pfam-A.full.gz                            100%[====================================================================================>]  14.14G  11.2MB/s    in 21m 47s

2022-03-24 16:56:16 (11.1 MB/s) - ‘DRAM_data/database_files/Pfam-A.full.gz’ saved [15188156081]

0:47:36.473301: PFAM database processed
downloading ftp://ftp.ncbi.nlm.nih.gov/refseq/release/viral/viral.1.protein.faa.gz
--2022-03-24 17:21:48--  ftp://ftp.ncbi.nlm.nih.gov/refseq/release/viral/viral.1.protein.faa.gz
           => ‘DRAM_data/database_files/viral.1.protein.faa.gz’
Resolving ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)... 130.14.250.7, 130.14.250.11, 2607:f220:41f:250::228, ...
Connecting to ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)|130.14.250.7|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /refseq/release/viral ... done.
==> SIZE viral.1.protein.faa.gz ... 14008795
==> PASV ... done.    ==> RETR viral.1.protein.faa.gz ... done.
Length: 14008795 (13M) (unauthoritative)

viral.1.protein.faa.gz                    100%[====================================================================================>]  13.36M  7.53MB/s    in 1.8s

2022-03-24 17:21:51 (7.53 MB/s) - ‘DRAM_data/database_files/viral.1.protein.faa.gz’ saved [14008795]

downloading ftp://ftp.ncbi.nlm.nih.gov/refseq/release/viral/viral.2.protein.faa.gz
--2022-03-24 17:21:51--  ftp://ftp.ncbi.nlm.nih.gov/refseq/release/viral/viral.2.protein.faa.gz
           => ‘DRAM_data/database_files/viral.2.protein.faa.gz’
Resolving ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)... 130.14.250.7, 130.14.250.11, 2607:f220:41f:250::228, ...
Connecting to ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)|130.14.250.7|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /refseq/release/viral ... done.
==> SIZE viral.2.protein.faa.gz ... 32804181
==> PASV ... done.    ==> RETR viral.2.protein.faa.gz ... done.
Length: 32804181 (31M) (unauthoritative)

viral.2.protein.faa.gz                    100%[====================================================================================>]  31.28M  10.4MB/s    in 3.4s

2022-03-24 17:21:55 (9.18 MB/s) - ‘DRAM_data/database_files/viral.2.protein.faa.gz’ saved [32804181]

0:47:50.541944: RefSeq viral database processed
downloading ftp://ftp.ebi.ac.uk/pub/databases/merops/current_release/pepunit.lib
--2022-03-24 17:22:02--  ftp://ftp.ebi.ac.uk/pub/databases/merops/current_release/pepunit.lib
           => ‘DRAM_data/database_files/merops_peptidases_nr.faa’
Resolving ftp.ebi.ac.uk (ftp.ebi.ac.uk)... 193.62.193.138
Connecting to ftp.ebi.ac.uk (ftp.ebi.ac.uk)|193.62.193.138|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/databases/merops/current_release ... done.
==> SIZE pepunit.lib ... 448367206
==> PASV ... done.    ==> RETR pepunit.lib ... done.
Length: 448367206 (428M) (unauthoritative)

pepunit.lib                               100%[====================================================================================>] 427.60M  11.2MB/s    in 39s

2022-03-24 17:22:43 (10.9 MB/s) - ‘DRAM_data/database_files/merops_peptidases_nr.faa’ saved [448367206]

0:48:44.906226: MEROPS database processed
downloading http://fileshare.csb.univie.ac.at/vog/latest/vog.hmm.tar.gz
--2022-03-24 17:22:56--  http://fileshare.csb.univie.ac.at/vog/latest/vog.hmm.tar.gz
Resolving fileshare.csb.univie.ac.at (fileshare.csb.univie.ac.at)... 131.130.65.128
Connecting to fileshare.csb.univie.ac.at (fileshare.csb.univie.ac.at)|131.130.65.128|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 295237694 (282M) [application/x-gzip]
Saving to: ‘DRAM_data/database_files/vog.hmm.tar.gz’

DRAM_data/database_files/vog.hmm.tar.gz   100%[====================================================================================>] 281.56M  11.2MB/s    in 26s

2022-03-24 17:23:23 (10.7 MB/s) - ‘DRAM_data/database_files/vog.hmm.tar.gz’ saved [295237694/295237694]

0:49:55.414777: VOGdb database processed
downloading ftp://ftp.genome.jp/pub/db/kofam/profiles.tar.gz
--2022-03-24 17:24:07--  ftp://ftp.genome.jp/pub/db/kofam/profiles.tar.gz
           => ‘DRAM_data/database_files/kofam_profiles.tar.gz’
Resolving ftp.genome.jp (ftp.genome.jp)... 133.103.200.25
Connecting to ftp.genome.jp (ftp.genome.jp)|133.103.200.25|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/db/kofam ... done.
==> SIZE profiles.tar.gz ... 1347507136
==> PASV ... done.    ==> RETR profiles.tar.gz ... done.
Length: 1347507136 (1.3G) (unauthoritative)

profiles.tar.gz                           100%[====================================================================================>]   1.25G  11.2MB/s    in 1m 56s

2022-03-24 17:26:06 (11.1 MB/s) - ‘DRAM_data/database_files/kofam_profiles.tar.gz’ saved [1347507136]

0:54:03.988351: KOfam database processed
downloading ftp://ftp.genome.jp/pub/db/kofam/ko_list.gz
--2022-03-24 17:28:15--  ftp://ftp.genome.jp/pub/db/kofam/ko_list.gz
           => ‘DRAM_data/database_files/kofam_ko_list.tsv.gz’
Resolving ftp.genome.jp (ftp.genome.jp)... 133.103.200.25
Connecting to ftp.genome.jp (ftp.genome.jp)|133.103.200.25|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/db/kofam ... done.
==> SIZE ko_list.gz ... 797744
==> PASV ... done.    ==> RETR ko_list.gz ... done.
Length: 797744 (779K) (unauthoritative)

ko_list.gz                                100%[====================================================================================>] 779.05K  1.13MB/s    in 0.7s

2022-03-24 17:28:18 (1.13 MB/s) - ‘DRAM_data/database_files/kofam_ko_list.tsv.gz’ saved [797744]

0:54:06.682243: KOfam ko list processed
0:54:06.682337: PFAM hmm dat processed
0:54:06.682364: dbCAN fam activities processed
downloading http://fileshare.csb.univie.ac.at/vog/latest/vog.annotations.tsv.gz
--2022-03-24 17:28:18--  http://fileshare.csb.univie.ac.at/vog/latest/vog.annotations.tsv.gz
Resolving fileshare.csb.univie.ac.at (fileshare.csb.univie.ac.at)... 131.130.65.128
Connecting to fileshare.csb.univie.ac.at (fileshare.csb.univie.ac.at)|131.130.65.128|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 172023 (168K) [application/x-gzip]
Saving to: ‘DRAM_data/vog_annotations_latest.tsv.gz’

DRAM_data/vog_annotations_latest.tsv.gz   100%[====================================================================================>] 167.99K   339KB/s    in 0.5s

2022-03-24 17:28:19 (339 KB/s) - ‘DRAM_data/vog_annotations_latest.tsv.gz’ saved [172023/172023]

0:54:07.910194: VOGdb annotations processed
downloading https://raw.githubusercontent.com/shafferm/DRAM/master/data/genome_summary_form.tsv
--2022-03-24 17:28:19--  https://raw.githubusercontent.com/shafferm/DRAM/master/data/genome_summary_form.tsv
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 571894 (558K) [text/plain]
Saving to: ‘DRAM_data/database_files/genome_summary_form.20220324.tsv’

DRAM_data/database_files/genome_summary_f 100%[====================================================================================>] 558.49K  --.-KB/s    in 0.07s

2022-03-24 17:28:20 (8.24 MB/s) - ‘DRAM_data/database_files/genome_summary_form.20220324.tsv’ saved [571894/571894]

downloading https://raw.githubusercontent.com/shafferm/DRAM/master/data/module_step_form.tsv
--2022-03-24 17:28:20--  https://raw.githubusercontent.com/shafferm/DRAM/master/data/module_step_form.tsv
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 579664 (566K) [text/plain]
Saving to: ‘DRAM_data/database_files/module_step_form.20220324.tsv’

DRAM_data/database_files/module_step_form 100%[====================================================================================>] 566.08K  --.-KB/s    in 0.07s

2022-03-24 17:28:20 (7.55 MB/s) - ‘DRAM_data/database_files/module_step_form.20220324.tsv’ saved [579664/579664]

downloading https://raw.githubusercontent.com/shafferm/DRAM/master/data/etc_module_database.tsv
--2022-03-24 17:28:20--  https://raw.githubusercontent.com/shafferm/DRAM/master/data/etc_module_database.tsv
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 2378 (2.3K) [text/plain]
Saving to: ‘DRAM_data/database_files/etc_mdoule_database.20220324.tsv’

DRAM_data/database_files/etc_mdoule_datab 100%[====================================================================================>]   2.32K  --.-KB/s    in 0s

2022-03-24 17:28:21 (23.1 MB/s) - ‘DRAM_data/database_files/etc_mdoule_database.20220324.tsv’ saved [2378/2378]

downloading https://raw.githubusercontent.com/shafferm/DRAM/master/data/function_heatmap_form.tsv
--2022-03-24 17:28:21--  https://raw.githubusercontent.com/shafferm/DRAM/master/data/function_heatmap_form.tsv
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 10917 (11K) [text/plain]
Saving to: ‘DRAM_data/database_files/function_heatmap_form.20220324.tsv’

DRAM_data/database_files/function_heatmap 100%[====================================================================================>]  10.66K  --.-KB/s    in 0.001s

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downloading https://raw.githubusercontent.com/shafferm/DRAM/master/data/amg_database.tsv
--2022-03-24 17:28:21--  https://raw.githubusercontent.com/shafferm/DRAM/master/data/amg_database.tsv
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
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0:54:09.872396: DRAM databases and forms downloaded
0:54:09.883266: Files moved to final destination
/home/mike/miniconda3/envs/DRAM/lib/python3.9/site-packages/mag_annotator/database_handler.py:51: UserWarning: Database does not exist at path None
  warnings.warn('Database does not exist at path %s' % self.description_loc)
0:54:09.942834: DRAM description database populated
0:54:22.410448: Database preparation completed