YSP 2023 Unix Introduction

--- Unix-like systems (which we'll define in a little bit) are extremely pervasive in our computational world. And fortunately, having just a baseline familiarity can often grant us access to this extremely helpful and empowering environment. For our two sessions, we are going to run through a [Unix crash course](https://astrobiomike.github.io/unix/unix-intro) that is designed for folks completely new to the Unix-like command line, or those who would like a little more exposure to it. **No installation or prior experience is required 🙂** --- **Page Contents** [TOC] --- ## Schedule | Date | Time | Video | | -------- | -------- |:--------:| | 28 June | [9:00 – 11:00 AM PT](https://www.thetimezoneconverter.com/?t=9%3A00%20am&tz=PDT%20(Pacific%20Daylight%20Time)&) | [Link](https://us02web.zoom.us/rec/share/5n7S6ujq9S2dAyg4EeisVITJoounHXvpNP4bnBbZhz0L4D2olg_n4eIR-u5kuvlE.bYrkqQCYia-vb-c_ ) | | 30 June | [9:00 – 11:00 AM PT](https://www.thetimezoneconverter.com/?t=9%3A00%20am&tz=PDT%20(Pacific%20Daylight%20Time)&) | [Link](https://us02web.zoom.us/rec/share/oSBZ3HoKxdSenCTveqfLn7oELr3ZfmsUK9YDKw7v745ih0XMEClIc_1MNeM6PXQ.VDb4coRjtSHSkl1R) | --- ## Who am I? - [Mike Lee](https://astrobiomike.github.io/research/) - A biologist-turned-bioinformatician that focuses on microbes - "Non-traditional" academic path - 18-25 years old -> wannabe musician - started my undergrad at 25 - started PhD at 30 - Formal Education - A.S. General Science (Ocean County College, NJ, USA, 2011) - B.S. Biology (Kean University, NJ, USA, 2013) - Ph.D. Biology (University of Southern California, CA, USA, 2018) - Transitioned to exclusively bioinformatics during grad school - Post-doc with NASA Ames doing genomics with microbial isolates recovered from the ISS (2018-2020) - Joined BMSIS and NASA GeneLab in 2019 - My primary position now is as a GeneLab bioinformatician out of NASA Ames in northern CA ### Feel free to reach out to me anytime 🙂 * Email: MikeLee@bmsis.org * Twitter: [@AstrobioMike](https://twitter.com/AstrobioMike) * Message or tag me in the BMS slack group --- ## Unix Introduction All the material we're going to cover and more can be found at [Happy Belly Bioinformatics](https://astrobiomike.github.io/) 🙂 - [Unix crash course](https://astrobiomike.github.io/unix/unix-intro) - [Part 1: Getting started](https://astrobiomike.github.io/unix/getting-started) - [Part 2: Working with files and directories](https://astrobiomike.github.io/unix/working-with-files-and-dirs) - [Part 3: Redirectors and wildcards](https://astrobiomike.github.io/unix/wild-redirectors) - [Part 4: Six glorious commands](https://astrobiomike.github.io/unix/six-glorious-commands) - [Part 5: Variables and For loops](https://astrobiomike.github.io/unix/for-loops) --- ### Time permitting or suggested to do on your own * [An introduction to scripting](https://astrobiomike.github.io/unix/scripting) --- ## Accessing our computing environment The Unix course we are doing will always have a computational environment available for you to use on your own if wanted – as detailed at the top of the "[Getting started](https://astrobiomike.github.io/unix/getting-started)" page. For those of us doing things together for these 2 days, we are going to use dedicated cloud computers. To access your cloud computer, click your name in the table below. **These are no longer accessible** | Name | IP | | ---- | -- | | [Alejandro Valencia](http://149.165.152.35:8000) | 149.165.152.35 | | [Amanda Lima Guedes](http://149.165.152.14:8000) | 149.165.152.14 | | [Amira Gomaa ](http://149.165.153.66:8000) | 149.165.153.66 | | [Anna Christen](http://149.165.155.131:8000) | 149.165.155.131 | | [Anoop B S](http://149.165.155.149:8000) | 149.165.155.149 | | [Aram Khoshnaw](http://149.165.155.192:8000) | 149.165.155.192 | | [Bhargabi Banerjee](http://149.165.153.65:8000) | 149.165.153.65 | | [Caner Karabaşoğlu](http://149.165.153.168:8000) | 149.165.153.168 | | [Christine Baal](http://149.165.155.126:8000) | 149.165.155.126 | | [Devansh Jain](http://149.165.154.82:8000) | 149.165.154.82 | | [Disha Mukherjee](http://149.165.152.141:8000) | 149.165.152.141 | | [Divyeshwari Vansadia](http://149.165.153.63:8000) | 149.165.153.63 | | [Ellen Cook](http://149.165.155.87:8000) | 149.165.155.87 | | [Fatima Omar](http://149.165.153.187:8000) | 149.165.153.187 | | [Gabriella Rizzo](http://149.165.155.156:8000) | 149.165.155.156 | | [Harvey Sapigao](http://149.165.155.56:8000) | 149.165.155.56 | | [James Rohde](http://149.165.153.212:8000) | 149.165.153.212 | | [Jenna Cammerino](http://149.165.155.49:8000) | 149.165.155.49 | | [Leonardo Macedo Pereira da Silva](http://149.165.153.129:8000) | 149.165.153.129 | | [Liam Johnson](http://149.165.155.11:8000) | 149.165.155.11 | | [Melesa Ilhan](http://149.165.154.104:8000) | 149.165.154.104 | | [Mike Lee](http://149.165.152.135:8000) | 149.165.152.135 | | [Mohammadreza Shahjahan ](http://149.165.153.15:8000) | 149.165.153.15 | | [Nikki Lyons](http://149.165.152.61:8000) | 149.165.152.61 | | [Nova Butte](http://149.165.153.181:8000) | 149.165.153.181 | | [Patricio Mendoza](http://149.165.152.154:8000) | 149.165.152.154 | | [Payel Das](http://149.165.153.161:8000) | 149.165.153.161 | | [Reem Aljuhaimi](http://149.165.152.65:8000) | 149.165.152.65 | | [Roza Okon](http://149.165.154.0:8000) | 149.165.154.0 | | [Saima Shafique](http://149.165.155.197:8000) | 149.165.155.197 | | [Samantha Loor](http://149.165.155.226:8000) | 149.165.155.226 | | [Sayani Bose](http://149.165.154.36:8000) | 149.165.154.36 | | [Shreyan Datta](http://149.165.154.129:8000) | 149.165.154.129 | | [Tasneem Khokhar](http://149.165.153.170:8000) | 149.165.153.170 | | [Tiana Noll-Walker](http://149.165.153.227:8000) | 149.165.153.227 |