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# System prepended metadata

title: Manually Segmented Brain MRI
tags: [CVC Lab, Aaron - 2023]

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# Manually Segmented Brain MRI
###### tags: `CVC Lab` `Aaron - 2023` 
summaries by Aaron Dominick

The following website provides the manual segmentation of brain MRI's that we can use for supervised learning. The website is known as mindboggle(https://mindboggle.info/data.html) and the MRI data can be found here: (https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/HMQKCK). It includes 101 T1 weighted MRI images with manual segmentation. They segmented many regions of the brain but the ones I'm interested in for DaTSCAN is regions: [50:right caudate, 51: right putamen,11:left caudate,12:left putamen]. The segmented regions and their numerical representation is found here: (https://mindboggle.readthedocs.io/en/latest/labels.html)

3D mask RCNN
https://github.com/MIC-DKFZ/medicaldetectiontoolkit