# CIA Group Meeting

Group meeting schedule for the *Computational Image Analysis* Group at the CCTB.

## Mode

* __Thursday, 13:15__, every two weeks
* currently __online only__ via Zoom:
* https://go.uniwue.de/cia-zoom
* password: 157772
* alternating with __CIA journal club__ and __DLJC__
* __Topics:__
1) update on general issues by Philip
2) presentation by one group member (according to schedule)
3) discussion, questions, short updates by others (voluntary)
* __Examples for what to present:__
* give update about your project
* could also show something that did not work
* discuss problems, ask for help, review code
* give intro about a method or topic
* or talk about anything that might be of interest for the group

## Voting for paper presentation in CIA Journal Club

https://www.zotero.org/groups/4563609/cia-cctb-library/library

* Content-aware frame interpolation (CAFI): Deep Learning-based temporal super-resolution for fast bioimaging, Priessner et al.
* Precise measurement of nanoscopic septin ring structures in deep learning-assisted quantitative superresolution microscopy, Zehtabian et al.
* Isotropic Reconstruction of Electron Tomograms with Deep Learning, Liu et al.
* Graph Neural Network for Cell Tracking in Microscopy Videos, Ben-Haim et al.
* Common Limitations of Image Processing Metrics: A Picture Story, Reinke et al.:+1:

## Schedule

Please enter your topic yourself, and swap slots with someone else if you cannot make it. We can also invite external guests (suggestions welcome).

| Date | Event | Presenter | Topic |
| -------- | -------- | -------- | -------- |
| Jan 13 | Group Meeting | Philip | First Meeting 2022|
| Jan 20 | *Journal Club* | Philip | DeepFlash2 http://arxiv.org/abs/2111.06693 |
| Jan 27 | Group Meeting | Diana | TAC Test Talk |
| Feb 3 | *DLJC* | Philip | AlphaFold2 https://www.nature.com/articles/s41586-021-03819-2
| Feb 10 | Group Meeting | Sebastian | Compressed Sensing Networks |
| Feb 17 | *Journal Club* | Felix | Fourier Transformer https://arxiv.org/abs/2104.02555 |
| Feb 24 | Group Meeting | - | - |
| Mar 3 | *no meeting* | - |-
| Mar 10 | *DLJC* | Markus Ankenbrand |Prostate Cancer Discovery https://www.nature.com/articles/s41586-021-03922-4
| Mar 17 | Group Meeting | Chris | Napari plugin development |
| Mar 24 | *Journal Club* | Diana | Networks for Point Cloud Handling http://arxiv.org/abs/2104.05706 |
| Mar 31 | Group Meeting | Tristan | 4D Cell Tracking |
| Apr 7 | *DLJC* | Chris | Magnetic Control of Tokamak Plasmas https://www.nature.com/articles/s41586-021-04301-9
| Apr 14 | *no meeting* | - | -|
| Apr 21 | *no meeting* | - | - |
| Apr 28 | Group Meeting | Helmut | Unsupervised segmentation |
| May 5 | *Journal Club* | Sebastian | Fast DNA-PAINT imaging using a deep neural network https://www.biorxiv.org/content/10.1101/2021.11.20.469366v1
| May 12 | Group Meeting | Felix |The Tru-worm show: Simulating the c. elegans forward locomotion network |
| May 19 | *DLJC* | Philip | Using deep learning to annotate the protein universe https://www.nature.com/articles/s41587-021-01179-w |
| May 26 | *no meeting* | - | - |
| Jun 2 | *Journal Club* | Chris |Common Limitations of Image Processing Metrics https://arxiv.org/abs/2104.05642
| Jun 9 | Group Meeting | Diana | |
| Jun 16 | *no meeting* | - | - |
| Jun 23 | *no meeting* | - | - |
| Jun 30 | *no meeting* | - | -
| Jul 7 | *DLJC* | | |
| Jul 14 | Excursion | Philip | https://www.hochseilgarten-frankenturm.de/event-location
| Jul 21 | Group Meeting | PhD student candidates | application presentations |