---
# System prepended metadata

title: nf-core/hackathon - modules & subworkflows
tags: [' nf-core', bytesize, ' talk', ' open-source']

---

---
title: nf-core/hackathon - modules & subworkflows team
tags: nf-core, open-source, hackathon, modules, subworkflows
---

<!-- .slide: data-background="https://raw.githubusercontent.com/maxulysse/maxulysse.github.io/main/assets/img/svg/green_black_bg.svg" -->

<a href="https://www.nf-co.re"><img src="https://i.imgur.com/hEDjpCs.png" width="65%"><img></a>

🚀 Modules and Subworkflows 🚀

*18th-20th March 2024*
The hackathon March 2024 [Project Board](https://github.com/orgs/nf-core/projects/65)
The group discussion channel:`#hackathon-mar-2024-modules-subworkflows`


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# Team Leads

- General advice, pointers, co-ordination etc.
    - Maxime Garcia (@maxulysse)
    - Jose Espinosa-Carrasco (@JoseEspinosa)
    - Jonas Scheid (@jonasscheid)


_But always ask first in:
`#hackathon-mar-2024-modules-subworkflows`!_

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# Task ideas

- Implementing nf-test for modules
- Creating new modules
- Stubs for all modules

 ➡️ Follow the module [guidelines](https://nf-co.re/docs/contributing/modules)

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# Remember

- Add yourself to Team Members slide
- Assign yourself on issues on the [project board](https://github.com/orgs/nf-core/projects/65)
- Post your progress here **daily**!
- Sign up for a reviewing buddy! 🤝

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# Team Members

- [Maxime Garcia](@maxulysse)
- [Jose Espinosa-Carrasco](@JoseEspinosa)
- [Jonas Scheid](@jonasscheid)
- [Igor Trujnara](@itrujnara)
- [Georgia Kesisoglou](@georgiakes)
- [Xichen Wu](@wxicu)
- [Mariana Gonzales André](@mari-ga)
- [Thomas Roder](@MrTomRod)
- [Sara Krättli](@skraettli)
- [Alexander Nater](@alexnater)



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# Reviewing Buddy 

| Person A    | Person B |
|-------------|----------|
| Maxime      | Jonas    |
| Jose        | Jonas    |
| Thomas      | Sara     |

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# Day One

<small>
    
- [#2994](https://github.com/nf-core/modules/issues/2994) - Update all gatk subworkflows
    - PR: #1234
- [#5107](https://github.com/nf-core/modules/issues/5107) - Update output list in cellranger count module
    - PR: [#5108](https://github.com/nf-core/modules/pull/5108)
- [#5109](https://github.com/nf-core/modules/issues/5109) - Add paths in output directive in kallistobustools cout module
    - PR: [#5110](https://github.com/nf-core/modules/pull/5110)
- [#5150](https://github.com/nf-core/modules/issues/5150) - Add meta map to the iqtree module, quality improvements done in the process
    - PR: [#5167](https://github.com/nf-core/modules/pull/5167)
- [#5152](https://github.com/nf-core/modules/issues/5152) - Add meta map to fastme
    - PR: [#5191](https://github.com/nf-core/modules/pull/5191)

- ...
    
</small>

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# Day Two

<small>


</small>


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# Day Three

<small>


</small>